Gene detail information of Glyur001645s00024578.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G42640.1 | 0 | H(+)-ATPase 8 |
| NR | KHG19606.1 | 0 | ATPase 5, plasma membrane-type -like protein [Gossypium arboreum] |
| COG | NP_616605.1 | 5.00E-94 | H(+)-transporting ATPase [Methanosarcina acetivorans C2A] |
| Swissprot | tr|Q9M2A0|PMA8_ARATH | 0 | ATPase 8, plasma membrane-type |
| trEMBL | tr|A0A0A0LHF5|A0A0A0LHF5_CUCSA | 0 | Uncharacterized protein {ECO:0000313|EMBL:KGN60167.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01645 | 26700 | 31683 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01535 | PMA1, PMA2 | EC:3.6.3.6 | Oxidative phosphorylation | map00190 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001645s00024578.1 | PF00690.21 | Cation_ATPase_N | 19 | 82 | 4.90E-14 |
| Glyur001645s00024578.1 | PF00702.21 | Hydrolase | 184 | 308 | 6.60E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.056 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.003 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.135 |
| SRR2868004 | Drought Stress (root) | 0.010 |
| SRR2967015 | Control (root) | 0.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.029 |
| SRR8749030 | Uninduced | 0.065 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.007 |
| SRR8400027 | Control - Root | 0.000 |