Gene detail information of Glyur001643s00028426 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G09820.1 | 4.00E-44 | Plastid-lipid associated protein PAP / fibrillin family protein |
| NR | ACU20447.1 | 3.66E-116 | unknown [Glycine max] |
| Swissprot | tr|Q5M755|PAP7_ARATH | 8.00E-53 | Probable plastid-lipid-associated protein 7, chloroplastic (Precursor) |
| trEMBL | tr|I1KTE9|I1KTE9_SOYBN | 4.00E-117 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G15460.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01643 | 49400 | 51760 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001643s00028426.1 | PF04755.7 | PAP_fibrillin | 77 | 199 | 1.50E-23 |
| Glyur001643s00028426.2 | PF04755.7 | PAP_fibrillin | 77 | 259 | 2.50E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.085 |
| SRR1783600 | control | 0.051 |
| SRR1783602 | moderate drought stress | 0.229 |
| SRR1811619 | moderate drought stress | 0.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.126 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.126 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.006 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.927 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.324 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.323 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.555 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.464 |
| SRR2868004 | Drought Stress (root) | 2.582 |
| SRR2967015 | Control (root) | 1.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 34.390 |
| SRR9715740 | Leaf | 28.992 |
| SRR9715741 | Leaf | 33.940 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.314 |
| SRR9715743 | Root | 0.195 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.441 |
| SRR8749028 | MeJA induced 9h | 2.675 |
| SRR8749029 | MeJA induced 9h | 2.854 |
| SRR8749030 | Uninduced | 4.332 |
| SRR8749031 | Uninduced | 11.416 |
| SRR8749032 | Uninduced | 11.776 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.467 |
| SRR8400027 | Control - Root | 1.422 |