Gene detail information of Glyur001643s00028424 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10390.1 | 1.00E-72 | Histone superfamily protein |
| NR | XP_006301260.1 | 1.02E-90 | hypothetical protein CARUB_v10021660mg, partial [Capsella rubella] |
| Swissprot | tr|P68428|H32_WHEAT | 5.00E-93 | Histone H3.2 |
| trEMBL | tr|W5A3T1|W5A3T1_WHEAT | 3.00E-91 | Histone H3 {ECO:0000256|RuleBase:RU004471} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01643 | 44937 | 45347 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001643s00028424.1 | PF00125.19 | Histone | 58 | 132 | 2.30E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 35.759 |
| SRR1783600 | control | 30.123 |
| SRR1783602 | moderate drought stress | 18.323 |
| SRR1811619 | moderate drought stress | 16.775 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.060 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 37.093 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.990 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.092 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.712 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.154 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.677 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 289.811 |
| SRR2868004 | Drought Stress (root) | 123.265 |
| SRR2967015 | Control (root) | 134.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 106.525 |
| SRR9715740 | Leaf | 1.864 |
| SRR9715741 | Leaf | 23.059 |
| SRR9715739 | Root | 45.711 |
| SRR9715742 | Root | 36.533 |
| SRR9715743 | Root | 32.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 245.453 |
| SRR8749028 | MeJA induced 9h | 114.660 |
| SRR8749029 | MeJA induced 9h | 121.994 |
| SRR8749030 | Uninduced | 29.480 |
| SRR8749031 | Uninduced | 28.639 |
| SRR8749032 | Uninduced | 17.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 238.634 |
| SRR8400027 | Control - Root | 193.184 |