Gene detail information of Glyur001643s00028422 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G64040.1 | 7.00E-42 | photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) |
| NR | XP_003602547.1 | 2.22E-71 | Photosystem I reaction center subunit N [Medicago truncatula] |
| Swissprot | tr|P49107|PSAN_ARATH | 5.00E-64 | Photosystem I reaction center subunit N, chloroplastic (Precursor) |
| trEMBL | tr|G7JAX6|G7JAX6_MEDTR | 8.00E-72 | Uncharacterized protein {ECO:0000313|EMBL:AFK34346.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01643 | 41726 | 42818 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001643s00028422.1 | PF05479.6 | PsaN | 40 | 159 | 1.90E-49 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.104 |
| SRR1783600 | control | 0.053 |
| SRR1783602 | moderate drought stress | 0.219 |
| SRR1811619 | moderate drought stress | 0.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.571 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.266 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.160 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.314 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.493 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.506 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 801.589 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 775.878 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 34.662 |
| SRR2868004 | Drought Stress (root) | 40.541 |
| SRR2967015 | Control (root) | 17.981 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 870.084 |
| SRR9715740 | Leaf | 758.173 |
| SRR9715741 | Leaf | 730.072 |
| SRR9715739 | Root | 0.278 |
| SRR9715742 | Root | 4.071 |
| SRR9715743 | Root | 2.478 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.839 |
| SRR8749028 | MeJA induced 9h | 10.657 |
| SRR8749029 | MeJA induced 9h | 6.499 |
| SRR8749030 | Uninduced | 9.678 |
| SRR8749031 | Uninduced | 2.979 |
| SRR8749032 | Uninduced | 9.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.659 |
| SRR8400027 | Control - Root | 15.329 |