Gene detail information of Glyur001643s00028419 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18770.1 | 3.00E-101 | Autophagy-related protein 13 |
| NR | KHN29153.1 | 0 | Autophagy-related protein 13 [Glycine soja] |
| trEMBL | tr|K7L6R5|K7L6R5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G15500.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01643 | 22870 | 27502 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001643s00028419.1 | PF10033.4 | ATG13 | 19 | 263 | 1.20E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.364 |
| SRR1783600 | control | 11.517 |
| SRR1783602 | moderate drought stress | 16.356 |
| SRR1811619 | moderate drought stress | 16.284 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.056 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.283 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 29.046 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.754 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.856 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.169 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.629 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.206 |
| SRR2868004 | Drought Stress (root) | 14.104 |
| SRR2967015 | Control (root) | 18.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.158 |
| SRR9715740 | Leaf | 11.324 |
| SRR9715741 | Leaf | 10.260 |
| SRR9715739 | Root | 8.515 |
| SRR9715742 | Root | 6.747 |
| SRR9715743 | Root | 7.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.705 |
| SRR8749028 | MeJA induced 9h | 7.786 |
| SRR8749029 | MeJA induced 9h | 3.977 |
| SRR8749030 | Uninduced | 6.324 |
| SRR8749031 | Uninduced | 2.250 |
| SRR8749032 | Uninduced | 1.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.912 |
| SRR8400027 | Control - Root | 9.894 |