Gene detail

Gene detail information of Glyur001643s00028412

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18730.1	0	tetratricopeptide repeat (TPR)-containing protein
NR	XP_003532859.1	0	PREDICTED: protein TONSOKU-like isoform X1 [Glycine max]
COG	YP_722460.1	2.00E-18	hypothetical protein Tery_2811 [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q6Q4D0\|TONS_ARATH	0	Protein TONSOKU
trEMBL	tr\|I1KTF7\|I1KTF7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G15560.1}

Sequence

Transcript Sequence

>Glyur001643s00028412.1
ATGGACGTNGAGCTGAAGTCGGCGAAGGCCGCTTACCGGAACGCGAAGGCAGAGGGGAACCACCGNGAGGAAGCACGGTGGGCCAACGTCATCGGCGACATACTTAAGAACAGAGGAGAGTACGTCGAAGCTCTCAAGTGGCTCCGAATCGATTACGAAATCTCGCTCAAGCATTTGCCCGAGAAGCACTTGCTCCCTACTTGCCAATCTCTCGGCGAGATCTATCTCCGCCTCGAGCATTTCTCCGATGCCCTAATTTACCAGCAAAGGGCGAGCACGCAGCTCGGTCGAACTTACCACGAACTGTTTTCGAGATCGGATCATGATCACAACTCCATACGCAATGCGAAGAAGTACTTCAAGTGTGCCATGGATCTGGCGGTTACCCTCAAGGAGAATCCGCCGAATAACAAGTCTTCATTTCTCAAGGAATACGTAGACGCGCACAACAACATAGGCATGCTGGAAATGGATCTTGATAACCTGCATGAGGCGCAGAAGATCTTGACTAGAGGATTGGAGATNTGCGATGAAGAGGAGATCAGCGAGTACGACGATGGGCGCAGCAGGCTCCACCATAACCTTGGGAATGTGTATATGGAACTTAGGATTTGGGATGAGGCTAGGAAAAATATTAAGAGGGATATTCAGATTTGTAACAGGATTGGNCATTGTCAAGGGGAAGCCAAGGGCTATATTAACCTTGGCGAAGTGCATTACAGGACTCAGAAGTACGAGGAAGCNCGGTCTTATTATGAGAAGGCGCTTGCTTTGGCGAAGTCCTTGGAGGATGAGGATGCTTTGGTCAGGCAAATTAATCAGAATATTCAAACTGTGAAAGAAGCTGTCAAGGTAATGGATGAAATAAAGAGAGAAGAGCAGAACCTCAAAAAACTCAAGAGAGATATAGCCAATGTCAGAGGGACATCGAACGAGCGCAAATGTCTGCTGCAGCAAAACGCGTCTCTTGATCGCTTGGTCGAGAAAGCAAGGATGATTTCTTCGTGGGAGAAGCATTGTGAATTTGCAAAGGAGAAGAAGAAAATAGCACGTGAACTTTGTGACAAGCAAAGGTTGGGCGATTCATATCTGGATGTTGGAGAATCATACCAGAAGCTTAGGAAATTCAAGAAGGCAATCAAATGGTACAATAAGAGTTGGGAAATGTACAAAACAATTAGTAACTTAGAGGGGCAAGCACTGGTGAAAATTAATATTGGTAATGTTTTGGATTCTACTCACAATTGGAAAGAAGCGTTGGATGCATTTCAGGAGAGCTACAGGATTGCTGTTGAAGCAGACCTTCCTGATGTACAGCTTTCTGCCTTGGAAAATATGCATTATAGCAACATGATCAGATTTGATGATGAGGACGAGACCAGGAGGTTGAAACTTCTGATTGATAAACTAAAGAAGTCCAACGAAGAGCCAGAAGCTAAAAGTATGCCAGAGGATTGTTGTTCTGAGACTGATACTGAAGCAGATGATTATCTGTCAAATAGTGGGTCTGATGATTTCTGCTTTCCAAAGNCAATTTCTAGATCAGAAAATCTNACTCATGGAGAAGAATTGAAAGATGACACGCCTCTTATGTCACTCTATCAGTCCATTAAAGGCTCATCTAGAAAGATAACAGNCCACAAGGAAACTGTTGGTCGTAAACGTGTCCGTATAATTCTTTCTGACGATGACGATGACGAGATGGAGTGTTCAAGCAGAAAGGATAATGACTGCCTGTTAAAGGACTTGCCCACTCCTGATGCAACTAAGAGTGAAGAAAGTCCTTGTAAAATTCAGGTTGTCTCAGAGTATGGATCCAAACGTGCAAATAATGTTGAAGAAAGTAGTAGTTCATTCAAATGCTGGAGTACAAATACAGCCTCTAAAACTGGCAGACATTCAAGATCTTTGAGCAATGATATAGTTGCTGAACCTGATTTTCCTAGTGGTTCTAAATGTGATACAGATATCTCTGGCAAACAAAATGGTGTTTCCTATCCCATGTTGCATCATTCCCTTAATGATGTGCAGCAATATATTACATGCCGGATTGGGAATGATCTAATTCATGTAGACTTAGCCTTGTGCACTGCTGGTGATCAGTTGAATATTGACTCCTTAAAGGCTGTAGTTGCATGCTTATACTATCTACAGTTTCCAGCGGAAAAGAGATCAGAGGGTTTGTTGCCCATTATTCAGCACATAAAATGTGCTGGAAGAGATCTAGAATCCCTCGAAACTGTTGAAAAGCTTAAGGAACATCTGGGAAATGACATGGTTGAAGCTTCCATTGATGGATGGATTCATAAGCGCCTAATAAAAATGTATGTGGACTGCTGCAAAGAGTTGTCTGAGGTACCAAATATCAAGGTACTGAAGAAACTTTACAATTTAGAGGTTTCTGATGATGAAATCATTGTGTCTGACTGTGACCTGCAAGATTTATCTATAACTCCTTTGATAGATGCACTGCAATCCCAAGAGGCATTTGCAATGCTTGACATCTCTCACAATCTCTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01643	5	7356	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001643s00028412.1	PF13424.1	TPR_12	190	260	1.10E-14
Glyur001643s00028412.1	PF13424.1	TPR_12	359	430	2.50E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.522
SRR1783600	control	1.510
SRR1783602	moderate drought stress	1.149
SRR1811619	moderate drought stress	1.315

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.138
DRR006520	Root Summer glycyrrhizin high producing strain	1.127
DRR006521	Root Winter glycyrrhizin high producing strain	0.910
DRR006522	Root Winter glycyrrhizin high producing strain	0.949
DRR006523	Root Summer glycyrrhizin low producing strain	0.723
DRR006524	Root Summer glycyrrhizin low producing strain	0.613
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.235
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.220

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.046
SRR2868004	Drought Stress (root)	3.002
SRR2967015	Control (root)	3.091

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.200
SRR9715740	Leaf	0.077
SRR9715741	Leaf	0.154
SRR9715739	Root	0.229
SRR9715742	Root	0.704
SRR9715743	Root	0.643

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.597
SRR8749028	MeJA induced 9h	3.772
SRR8749029	MeJA induced 9h	0.990
SRR8749030	Uninduced	0.355
SRR8749031	Uninduced	0.360
SRR8749032	Uninduced	0.124

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.431
SRR8400027	Control - Root	2.823