Gene detail

Gene detail information of Glyur001639s00029619.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G23450.1	0	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_007153747.1	0	hypothetical protein PHAVU_003G061700g [Phaseolus vulgaris]
COG	YP_001179193.1	7.00E-26	galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprot	tr\|Q94AJ5\|PGLR5_ARATH	9.00E-96	Probable polygalacturonase At1g80170 (Precursor)
trEMBL	tr\|K7L9I3\|K7L9I3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G39315.1}

Sequence

Transcript Sequence

>Glyur001639s00029619.1
ATGCCACAAACGCTTCCAAACACGTTCATTCCCTTTCACAACAACAACAATGCCACCAGTGACTATGTCTACGTCAAAAACCTCGAAATCAATGCTTTCATAAAATCAAGGGACCTAAACTCTGCACTTGCAGTGTTCCACAACATGCCAGTGCGTGACACTGTCACCTACAACTTGCTCATTTCCAAATGCTCTTTGCCACCTGAAGAGTCTCTTCATCTCTATGCCCAAATGGGTATTCAAGGAATGAGAGAAACCCCAACCACGTTCTCCTCTGTTATATCTCTTTGCACCACCAATGCTGGGTTCCTCAGAGAAGGTGTTCAGGTGCATTGCAGGGTGGTGAAGTTTGGATTTTTNAGCAACGTGTTCGTTGGTGGTGCACTTGTTGGTTTCTACATGCGTGTGGGGCTAAGTGGGGTGGCATTGAAATTGTTTGATGAGTTGCCAGAACGAAACTTGGGTGTGTGGAATGTGATGCTGCGTGGCTTCTGCGAACTGGGTCTTGTGAAAGAGTCTCTTATTGGATCATTTTACTCTCGGATGTGTTTTGAAGGTGTGGAGCCAAATGGGGTCACGTTTTGTTATTTGCTTAGGGGGTGTAGTATCCAGAGAATGTTGCATGAAGGGAAGAGGCTTCAAGGTTGCATTTTGAAGATGGGTTTGGTGGAATCCAACGTTTTTGTTGCCAATGCTTTGGTGGATTTTTACTCTGCTTGTGGGTGCTATGTTGGTGCAAGGAAGTGTTTTGAGGCCATACCAGTTGAAGATGTTATTTCATGGAACTCGTTGGTTTCTGTTTGTGCAGACAACAATCTGTTGCTTGATGCTTTGAAGTTGTTTTCTGTTATGCAGAATTGGGGACACAGGCCATCAGTTCGTTCATTGGTGGGGTTCTTGAATTTGTGTAGTAGAACTGAGGAGATTCGTTTGGGGAAGCAGATTCACTGCCACGTTGTGAAATTGGGTTTTGTTGAAGGGAGTGTGCATGTTCAATCTGCTTTGATTGACATGTATGGGAAATGCTGGGACATTGAGAGTTCTGTGGCTGTATTTGAATGCCTTCCNAAGAGGACTTTGGAGTGTTGCAACTCATTGATGACCTCTTTGTGTCATTGTGGTGGTAGCACTGAGGATGTGGTGGAGTTGTTTGGTTTGATGGTGGATGAAGAAGGTCTTGTGCCAGATGAAGTAACCTTTTCCACCACACTAAAGGCATTGTCANTGTCATCAGTGTCTTGTGCTTCGGCAAGCTTGATCACGAGCTCCCGGTTACTGCATTGCTTTGCATTGAAATCTGGAGTTGAAAGAGACTCAGCAGTTGCATGTTCCCTTATGGATGCATATTCAAGATGTGGGCAAGTGGAACTTTCTCATCAGATCTTTGAGACCCTTCCNTCCCCAAATGCTATTTGCTTCACATCCATGATCAGTGGATATGCCCGGAATGGAATGGGGAAAGAAGGACTCTCAGTGCTGCATGCTATGATTGAGAAAGGCTTAAAACCTGATGAAGTTACCTTCTTGTGTGCATTAGCAGGGTGTAGCCACACTGGACTGGTTGAAGAAGGAAGAATAGTCTTTAACTCAATGGAATCTCTTCACGGGGTTCACCCGGATCGAAGGCACTTTTCGTGCATGGTGGATCTGTTATGCCGTGCGGGACTTCTGCGTGAAGCTGAAGAGTTTCTGCTAAAAGCACCAGGAAAGGGAGACTGCTTTATGTGGAGCTCTTTGTTGAGGAGTTGCAGGGTCCACAGGAATGAAGAGGTTGGAACAAGAGCAGCAAAGGTGTTGGTTGAGCTAGACCCAGATGACCCAGCAGTGTGGTTGCAGGCTTCGAATTTTTATGCCGAGATAGGGAAATTCGATGCCGCAAGGCAAATCAGAGAGGTTGCTTTTGCGAGGAAGATGACTAGGGAGATTATTGGTAGAACGGCGGCTCATGGGGTTGCAGGAAACCTGACNTGCGACAACATTGGCATGCTTGAAGAACTTAAAAGCCTGGACTTTGAGTTAGAGGAAGAAACTGAGGTTGAGCTTTCTGACATCCCTTCGTGGACAAGCGAGCGGGGCGGAAAGGTTCTTGTGAATGTTGATAGNTTTGGTGCTGCTGGGAATGGAGAATCTGATGATACTGAGGCTTTTAGAAAAGCATGGGGAGTTGCTTGTTCTACACCAAAATCTGTTCTCTTGGTTCCCCAAGGACGCCGTTACCTAGTTAATGCCACCAAATTCAAAGGGCCTTGTGCAGGCATGCTAATCATCCAGATTGATGGAACATTGGTTGCTCCACATGAGCCTAAGAACTGGGATCCGAATCTTCCACGGGTTTGGCTTGATTTTTCAAAATTGAATAAGGCTGTTTTCCAAGGTGCTGGAGTGATTGATGGCTCAGGAAGCAAATGGTGGGCTGCATCTTGCAAAAAGAACACGTCAAATCCTTGCAAAGGTGCACCAACTGCATTAACCATTGATTCTAGCTCAGCTATAAGGGTGAAAGGACTAACTATCCAGAATAGCCAACAGATGCATTTCACCATATCGCGATGCGATTCGGTTCGAATCTATGGAGTGAAAGTGTCATCACCAGGAGACAGTCCGAACACTGACGGAATTCATATTAGTGAATCAACAAATGTCCTTGTCCAAGACTGCAAAATTGGAACAGGGGATGATTGCATATCAATTGTCAATGCTAGCTCTAATATCAAAATGAAGAGGATTTTTTGTGGACCTGGACACGGAATCAGCATTGGAAGCCTTGGGAAAGACAACTGTACTGGTGTAGTCACAAAAGTGATTTTGGATACAGCATTGCTCAGGGGCACTACCAATGGTGTCCGGATAAAGACTTGGCAGGGAGGTTCTGGATATGTTAAAGGGGTACGCTTTCAGAATGTGCGGTCATCGGCATTGGAGATAAGCGAGATCATGTACCAGAACATAAGTGGGACTACAAATAGTGCAAAGGCCATAAATTTTGACTGCAGTGACACTGTTCCTTGTAGCAGCTTAGTCCTTAGCAATGTGAATTTGGAGAAACAGGATGGCACTGTGGAAACTTACTGCCACTCAGCCCAAGGATTTGGNTATGGGTTGGTTCATCCTTCTGCTGATTGCCTTAATTCCAACGATAAAATCTCTCAAGTTGCTGCTGCTGCTGATGGTGATATAGACTAG

Protein Sequence

>Glyur001639s00029619.1
MPQTLPNTFIPFHNNNNATSDYVYVKNLEINAFIKSRDLNSALAVFHNMPVRDTVTYNLLISKCSLPPEESLHLYAQMGIQGMRETPTTFSSVISLCTTNAGFLREGVQVHCRVVKFGFXSNVFVGGALVGFYMRVGLSGVALKLFDELPERNLGVWNVMLRGFCELGLVKESLIGSFYSRMCFEGVEPNGVTFCYLLRGCSIQRMLHEGKRLQGCILKMGLVESNVFVANALVDFYSACGCYVGARKCFEAIPVEDVISWNSLVSVCADNNLLLDALKLFSVMQNWGHRPSVRSLVGFLNLCSRTEEIRLGKQIHCHVVKLGFVEGSVHVQSALIDMYGKCWDIESSVAVFECLPKRTLECCNSLMTSLCHCGGSTEDVVELFGLMVDEEGLVPDEVTFSTTLKALSXSSVSCASASLITSSRLLHCFALKSGVERDSAVACSLMDAYSRCGQVELSHQIFETLPSPNAICFTSMISGYARNGMGKEGLSVLHAMIEKGLKPDEVTFLCALAGCSHTGLVEEGRIVFNSMESLHGVHPDRRHFSCMVDLLCRAGLLREAEEFLLKAPGKGDCFMWSSLLRSCRVHRNEEVGTRAAKVLVELDPDDPAVWLQASNFYAEIGKFDAARQIREVAFARKMTREIIGRTAAHGVAGNLTCDNIGMLEELKSLDFELEEETEVELSDIPSWTSERGGKVLVNVDXFGAAGNGESDDTEAFRKAWGVACSTPKSVLLVPQGRRYLVNATKFKGPCAGMLIIQIDGTLVAPHEPKNWDPNLPRVWLDFSKLNKAVFQGAGVIDGSGSKWWAASCKKNTSNPCKGAPTALTIDSSSAIRVKGLTIQNSQQMHFTISRCDSVRIYGVKVSSPGDSPNTDGIHISESTNVLVQDCKIGTGDDCISIVNASSNIKMKRIFCGPGHGISIGSLGKDNCTGVVTKVILDTALLRGTTNGVRIKTWQGGSGYVKGVRFQNVRSSALEISEIMYQNISGTTNSAKAINFDCSDTVPCSSLVLSNVNLEKQDGTVETYCHSAQGFGYGLVHPSADCLNSNDKISQVAAAADGDID

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01639	43646	52169	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0004650 polygalacturonase activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001639s00029619.1	PF01535.15	PPR	156	173	0.29
Glyur001639s00029619.1	PF01535.15	PPR	259	288	0.00044
Glyur001639s00029619.1	PF13041.1	PPR_2	468	516	1.60E-08
Glyur001639s00029619.1	PF01535.15	PPR	544	566	0.026
Glyur001639s00029619.1	PF00295.12	Glyco_hydro_28	724	968	9.00E-74
Glyur001639s00029619.1	PF00295.12	Glyco_hydro_28	971	1020	4.30E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.256
SRR1783600	control	0.234
SRR1783602	moderate drought stress	0.465
SRR1811619	moderate drought stress	0.426

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.792
DRR006520	Root Summer glycyrrhizin high producing strain	3.797
DRR006521	Root Winter glycyrrhizin high producing strain	0.164
DRR006522	Root Winter glycyrrhizin high producing strain	0.205
DRR006523	Root Summer glycyrrhizin low producing strain	4.819
DRR006524	Root Summer glycyrrhizin low producing strain	4.819
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.997
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.026

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.702
SRR2868004	Drought Stress (root)	3.158
SRR2967015	Control (root)	3.433

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.339
SRR9715740	Leaf	0.291
SRR9715741	Leaf	0.242
SRR9715739	Root	0.122
SRR9715742	Root	6.061
SRR9715743	Root	3.798

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.556
SRR8749028	MeJA induced 9h	0.678
SRR8749029	MeJA induced 9h	0.281
SRR8749030	Uninduced	0.173
SRR8749031	Uninduced	0.384
SRR8749032	Uninduced	0.324

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.308
SRR8400027	Control - Root	1.790