Gene detail

Gene detail information of Glyur001639s00029616.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G60550.1	2.00E-141	enoyl-CoA hydratase/isomerase D
NR	KEH20043.1	0	1,4-dihydroxy-2-naphthoyl-CoA synthase [Medicago truncatula]
COG	YP_002019238.1	2.00E-129	naphthoate synthase [Pelodictyon phaeoclathratiforme BU-1]
Swissprot	tr\|Q8GYN9\|MENB_ARATH	3.00E-177	1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal
trEMBL	tr\|A0A072TT65\|A0A072TT65_MEDTR	0	1,4-dihydroxy-2-naphthoyl-CoA synthase {ECO:0000313\|EMBL:KEH20043.1}

Sequence

Transcript Sequence

>Glyur001639s00029616.2
AAAGGGGATGGAGGGAGTAATTTTCAACCGTCAACTGTGGCTGGGTTCNCTCTTCTTATTCCCCAGTCAGACAGCACTGCTTCTTCACCTTATCCTTATCGGTGAAGAAGGAGAAGTCGCTAGCTATTAGCATTTCAGAGCTCCAATGGCAGCGAAGAACAACAAGAAGGACGTTGTCGACACCGCCATAAGGAGGGTCACCTCTGTAACCAACCACCTCATTCCCACTCCNTCCACCACCGCCCCACCTGAACTCGGCGGGTTGGGCCTCGCTTGGGCCAGAAACGATGATAGCAGCTACCAACGGGTCCATGGGGATGTTCCCTCTCACGACGTCGTTTGGAGGTTGATTGCTTCCGATGACTCTGGCGGCAAGGACTTCACTGACATCCTCTACGAAAAATCCGTTGGTGAAGGAATTGCTAAGATTACTATTAATAGGCCAGAGAGAAGGAATGCGTTCAGACCCCACACGGTTAAGGAGCTCATTCGTGCTTTCAATGATGCCAGGGACGATGCCTCTGTTGGGGTCATCATTCTCACTGGCAAGGGAACCAAGGCATTTTGTAGTGGTGGTGACCAGGCTTTGAGAACTGAAGATGGTGCAGATCCGCCGCCTTCCAAAGCCAGTAATTGCAATGGTTATGCTGTTGGAGGAGGGCATGTATTACATATGGTTTGTGATCTAACCATTGCAGCAGATAATGCTATCTTTGGCCAAACTGGTCCTAAGGTTGGAAGCTTTGATGCTGGTTATGGAAGTTCTATCATGTCCCGTTTGGTAGGTCCAAAAAAAGCACGTGAAATGTGGTTTCTCACAAGGTTCTATACTGCTGTTGAAGCAGAGAAAATGGGCCTTGTCAATACTGTTGTACCGAATTTAGAAAGAGAAACAATAAAATGGTGTCGGGAGATACTCAGAAACAGCCCAACTGCNATTCGGGTTCTCAAGTCAGCTCTTAATGCGGAAATTGGTGGAAATGCAACACTGATATTTTATGGCACTGAGGAAGCAAATGAGGGAAAGACTGCATATATGCAGCGTAGACGGCCAGATTTTTCCAAGTTTCCTAGGAGACCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01639	21335	25699	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01661	menB	EC:4.1.3.36	Ubiquinone and other terpenoid-quinone biosynthesis	map00130
			Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0009234 menaquinone biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0008935 1,4-dihydroxy-2-naphthoyl-CoA synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001639s00029616.2	PF00378.15	ECH	88	149	1.90E-14
Glyur001639s00029616.2	PF00378.15	ECH	164	275	5.60E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.884
SRR1783600	control	8.024
SRR1783602	moderate drought stress	13.810
SRR1811619	moderate drought stress	13.840

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.100
DRR006520	Root Summer glycyrrhizin high producing strain	24.201
DRR006521	Root Winter glycyrrhizin high producing strain	31.540
DRR006522	Root Winter glycyrrhizin high producing strain	30.407
DRR006523	Root Summer glycyrrhizin low producing strain	21.019
DRR006524	Root Summer glycyrrhizin low producing strain	21.308
DRR006525	Leaf Summer glycyrrhizin high producing strain	93.898
DRR006526	Leaf Summer glycyrrhizin high producing strain	94.163

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.319
SRR2868004	Drought Stress (root)	16.815
SRR2967015	Control (root)	15.871

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	52.537
SRR9715740	Leaf	58.017
SRR9715741	Leaf	49.971
SRR9715739	Root	3.978
SRR9715742	Root	6.190
SRR9715743	Root	5.249

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.844
SRR8749028	MeJA induced 9h	13.877
SRR8749029	MeJA induced 9h	9.501
SRR8749030	Uninduced	24.852
SRR8749031	Uninduced	16.408
SRR8749032	Uninduced	18.292

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.973
SRR8400027	Control - Root	13.621