Gene detail information of Glyur001639s00029613


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G20490.11.00E-26nucleolar RNA-binding Nop10p family protein
NRXP_004151989.17.07E-39PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein-like [Cucumis sativus]
Swissprottr|Q93XX8|NOP10_ARATH2.00E-34H/ACA ribonucleoprotein complex subunit 3-like protein
trEMBLtr|M0S1K9|M0S1K9_MUSAM4.00E-39Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P20510_001}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold0163953577459-


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
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Gene Ontology

biological_process

GO:0001522  pseudouridine synthesis

GO:0042254  ribosome biogenesis


cellular_component

GO:0072588  box H/ACA RNP complex


molecular_function

GO:0030515  snoRNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001639s00029613.1PF04135.7Nop10p3534.70E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.205
SRR1783600control14.455
SRR1783602moderate drought stress11.226
SRR1811619moderate drought stress11.094

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.045
DRR006520Root Summer glycyrrhizin high producing strain15.795
DRR006521Root Winter glycyrrhizin high producing strain8.417
DRR006522Root Winter glycyrrhizin high producing strain8.121
DRR006523Root Summer glycyrrhizin low producing strain23.461
DRR006524Root Summer glycyrrhizin low producing strain23.430
DRR006525Leaf Summer glycyrrhizin high producing strain6.298
DRR006526Leaf Summer glycyrrhizin high producing strain5.958

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)19.667
SRR2868004Drought Stress (root)9.923
SRR2967015Control (root)12.343

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf17.873
SRR9715740Leaf22.000
SRR9715741Leaf22.704
SRR9715739Root11.366
SRR9715742Root23.108
SRR9715743Root17.413

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h35.276
SRR8749028MeJA induced 9h21.079
SRR8749029MeJA induced 9h23.372
SRR8749030Uninduced10.870
SRR8749031Uninduced2.760
SRR8749032Uninduced5.459

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root37.234
SRR8400027Control - Root35.227

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved