Gene detail information of Glyur001638s00037339 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G29770.1 | 2.00E-58 | methyl esterase 11 |
| NR | AFK46482.1 | 6.38E-83 | unknown [Medicago truncatula] |
| COG | YP_001531045.1 | 8.00E-20 | alpha/beta hydrolase fold protein [Desulfococcus oleovorans Hxd3] |
| Swissprot | tr|Q9FW03|MES11_ARATH | 1.00E-70 | Putative methylesterase 11, chloroplastic (Precursor) |
| trEMBL | tr|I3T1U0|I3T1U0_MEDTR | 2.00E-83 | Uncharacterized protein {ECO:0000313|EMBL:AFK46482.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01638 | 32422 | 34149 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001638s00037339.1 | PF12697.2 | Abhydrolase_6 | 13 | 115 | 9.60E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.057 |
| SRR1783600 | control | 2.793 |
| SRR1783602 | moderate drought stress | 4.229 |
| SRR1811619 | moderate drought stress | 4.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.693 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.559 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.721 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.608 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.867 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.810 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.780 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.432 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.619 |
| SRR2868004 | Drought Stress (root) | 12.811 |
| SRR2967015 | Control (root) | 9.909 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.605 |
| SRR9715740 | Leaf | 9.194 |
| SRR9715741 | Leaf | 31.666 |
| SRR9715739 | Root | 4.753 |
| SRR9715742 | Root | 27.877 |
| SRR9715743 | Root | 24.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.744 |
| SRR8749028 | MeJA induced 9h | 7.187 |
| SRR8749029 | MeJA induced 9h | 7.576 |
| SRR8749030 | Uninduced | 8.399 |
| SRR8749031 | Uninduced | 6.407 |
| SRR8749032 | Uninduced | 6.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.574 |
| SRR8400027 | Control - Root | 16.078 |