Gene detail

Gene detail information of Glyur001636s00039703.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G53000.1	7.00E-123	Nucleotide-diphospho-sugar transferases superfamily protein
NR	KEH41941.1	0	3-deoxy-manno-octulosonate cytidylyltransferase [Medicago truncatula]
COG	YP_003709470.1	3.00E-75	3-deoxy-manno-octulosonate cytidylyltransferase [Waddlia chondrophila WSU 86-1044]
Swissprot	tr\|Q9C920\|KDSB_ARATH	3.00E-170	3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial (Precursor)
trEMBL	tr\|A0A072VK14\|A0A072VK14_MEDTR	0	3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000313\|EMBL:KEH41941.1}

Sequence

Transcript Sequence

>Glyur001636s00039703.1
CTTGCTTTAGCACCGTCTAATTTTGTTTTTTTACCATNGTCTCTGCTCCCATCTCCGCCGTTCTCCATTCTCTCAGACCCACCCCACAACCCCAACCTTCCCCATTTTCTCAGTCCCCTCATTCTCTCAACCGTTTGAGTCCTCTCCCTCCCCTCTCAACCTCCATCTCAGTTCCTCTCCCTCAACCAAATCCGTCTCAGCCTTCAACCTCAGATCTCACCATCCTCCACCCCCTCAACCTTGGATCTCTCTCCCTCGGACTCACCCTCCTCCACCTTGGATCTCACTGCCTCTCCCCCGGACTCACCCTCAACGCTCTCGGATCTAGGTTCAAATGGCCATGCAGTGAAGGAGGTGGGACATTGTTATCCGTTCCAATGGCAATTTGTTCCTCACCTTCATCTTCGTCCACGTTTGACTCTTCCAACAACGCAAAGGGATGGATCGTCCACGGCATTGTGGCTGGAATTGCAATTGCAGCTGCTGTGGGTGCTCGCGCTTACCTGACCCGATTCAACAAATTGCGGAACCGGGTCGTTGGAATCATACCCGCNCGATTCGCTTCATCTCGGTTCCCTGGAAAGCCTCTTGTTCAAATCCTTGGCAAGCCCATGATCCAGAGAACATGGGAAAGGGCAAAGCTGGCAACTACATTGGATCNTGTTGTTGTGGCAACTGATGATGAAAAGATTGCCGACTGCTGTCGACAATTTGGAGCTGATGTCATAATGACATCAGAATCCTGCCGAAATGGTACTGAGCGCTGCAATGAAGCCCTNCAGAAGCTTGGGAAAAAATATGATATTGTGGTAAACATTCAGGGTGATGAGCCACTTGTTGAACCTGAGATAATAGATGGTGTTGTCAAAGCTTTGCAGGCAGCTCCAGATGCAGTGTTCAGCACTGCAGTTACGTCTTTAAAGCCTGAAGATGCACATGATTCAAATAGAGTGAAATGTGTGGTTGATAATCATGGTTATGCCATCTATTTTTCACGAGGATTAATCCCATTCAATAAGTCAGGGAAGGTCAATCAACATTTCCCTTATTTGCTTCATCTTGGGATTCAGAGCTATGATGCAAAGTTTCTAAAGATATACCCAGATCTTCAACCTACTCCGTTGCAACTTGAGGAGGATTTGGAGCAGCTTAAAGTCCTTGAGAATGGCTATAAGATGAAGGTAATAAAGGTTGACCATGAGGCCCATGGTGTTGACTCCCCTGAAGATGTTGAAAAGATAGAATCTCTAATGCGTGAGAGGAACTTGTCTTGAGCGCTCAGTTACACAGCAATGAAACCATTACAGATAGAGTTGGACATTCTTTTTTATTTTTTTAATAACTCTTGTTGCTTTCAACATAGTACGAGTGTTATAATTTATAGTGTTATTTTTTAACATGGGCGGTAGTACTAGGTTTTCATGTACAAGTAAGCATATACAAGAATTAAAATTTTATTTACACAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01636	35479	45601	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00979	kdsB	EC:2.7.7.38	Lipopolysaccharide biosynthesis	map00540

Gene Ontology

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0008690 3-deoxy-manno-octulosonate cytidylyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001636s00039703.1	PF02348.14	CTP_transf_3	55	264	2.50E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.809
SRR1783600	control	40.193
SRR1783602	moderate drought stress	24.182
SRR1811619	moderate drought stress	23.859

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.103
DRR006520	Root Summer glycyrrhizin high producing strain	29.173
DRR006521	Root Winter glycyrrhizin high producing strain	20.885
DRR006522	Root Winter glycyrrhizin high producing strain	20.281
DRR006523	Root Summer glycyrrhizin low producing strain	27.247
DRR006524	Root Summer glycyrrhizin low producing strain	27.164
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.362
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.179

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.779
SRR2868004	Drought Stress (root)	32.576
SRR2967015	Control (root)	35.171

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.003
SRR9715740	Leaf	16.621
SRR9715741	Leaf	18.229
SRR9715739	Root	17.619
SRR9715742	Root	24.749
SRR9715743	Root	23.298

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.702
SRR8749028	MeJA induced 9h	28.836
SRR8749029	MeJA induced 9h	29.539
SRR8749030	Uninduced	20.305
SRR8749031	Uninduced	10.467
SRR8749032	Uninduced	12.860

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.700
SRR8400027	Control - Root	37.286