Gene detail

Gene detail information of Glyur001633s00037208

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34930.1	2.00E-104	disease resistance family protein / LRR family protein
NR	XP_003627996.1	0	Receptor-like kinase [Medicago truncatula]
COG	YP_001192956.1	2.00E-33	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|Q9FL28\|FLS2_ARATH	8.00E-72	LRR receptor-like serine/threonine-protein kinase FLS2 (Precursor)
trEMBL	tr\|G7LIA8\|G7LIA8_MEDTR	0	Receptor-like protein {ECO:0000313\|EMBL:AET02465.1}

Sequence

Transcript Sequence

>Glyur001633s00037208.1
ATGGTTAGATTTTGCTCCCAAAGTGCACTCCTTTCTCTAATATTGCTACCATTTGCATTCATTTGCAATTTGGTAACATGCGAGTTTAAGCCTTCTTGCAACGAAAAGGACAAGCAAATACTCCTTTACTTTAAGCATGGACTCATTGATCCATCAGGAATGCTGTCAACATGGTCCAATAAAGAAGATTGCTGTGAATGGAGAGGAGTTCAATGTGACATCACTCACAGAGTCACAAATCTCAGCCTCCCTTGTTCCACAGATGAGTTTGTTTATGGCATCAGCAAGAACAAAACACATTGTTTGGCAGGTGAATTCCACCTTTCTTTACTCCAACTTGAGTTTTTGGACCACTTGAATTTGAGCAACAATAACTTTAAGGTTGTACACTTGCCGTTGGATTACCAAAACTTGTCATTAGTTAACTCCTCCAATCTTGCATATCTTGACTTGTCAAAAAATGAGAATCTTTTGATCGATGATTTGAGATGGATTCTTTGTCTTTCATCCTTAGAATATCTCAACTTGAATTCCATTGATCTCCACAAGCAAACTCATTGGCTTCAGATATTGACTATGCTTCCTTCACTTTCTGAGTTACACTTGAGTAGTTGCTTCCTTGAAAGCGCTAGTCCATCTCTTGAATATGCCAATTTTACTTCACTTGAATATCTTGATCTTTCGGACAATGATTTCTTCTCTGAATTACCTAAATGGCTTTTCAATCTAAGCGGCCTTTCTGATTTGCATCTTGAGGAAAATCGTTTCCATGGCCAAATACCCAGCTCTTTATTAAATCTTAGAAGCATACATTCCTTAACAGTGAGCAACAACATGCTGAGTGGAACAATTCCCGAATGGATAGGCCAACTTGGAAGCCTACAATATCTTGATCTCTCTGGGAATTTATTTACTGGTTCTATTCCCACAACTTTGGGGAATTTGTCATCCTTGCTAGGCTTTGATGTCGTCTCAAATCACCTTACTGGTAGCCTTCCAGAAAGTTTGGGGCAACTCTCAAATTTGGAGAAGTTGGGCGTTGGAAAAAATTCTCTTTCTGGAGTTGTGTCGCAAAGAAATTTTGCCAAGCTCTCAAAGTTACAAGAATTGTACTTGGGTTCACCCTCCTTTTTCTATGATTTTGATCCCCAATGGATTCCTCCATTTCAACTTCATGTACTTTTCTTGGATTATGCAGATCTTAAATTTCTTCCATGGTTGTTGACACAAACATCTCTCAACCATCTACATATTGCAAGCTCCTCATTTCCGACTATATTTGCAGACAAGTTTTGGAGTTGGGCAAGTGACATTGGATTTCTCTATTTATCCAATAATTCCATGAATTGGGACATGTCAAACGTGTTGTTGAACTCTCCAATAATATGGCTGGCTGGAAATGGTTTGAGCGGTGGCCTTCCTCGGCTAACTTCAAATGTAACTTTTTTTAAGATAGGAAACAACTCTTTATCTGGATCTCTTTCTCCTCTCTTGTGTCCTAATAACACGATGGGGGAAAGAAATTTACAATACTTGGACATTTCTCACAACCATTTATCTGGAGGGATCACTGATTGTTGGGTAAACTGGAAATCTTTGGTTCATGTTAATATAGGGAGCAATAATCTAACTGGCATGATTCCGCACTCGTTGGGTGCCTTGTCCAATCTTTTGTCGTTACATCTTGATAATAACAAGTTGCATGGAGAGATACCTCTGGCACTGAAAAATAGTCAAAAACTCATGATTCTTAATCTTGGTGAAAATAAATTTTCCGGAAGAATACCAGATTTTATGGGACCAGTGAAAGCTATCATGTTGAGATCGAATGAATTTAGCGGGGATATTCCTCTACATATATGTCAGTTTTCTTCTCTCATAGTATTGGATCTCGCAAATAATAGATTATCGGGAACAATACCCCACTGCCTACATAATATCACCGCCATGGTTTTGAACAATGCTTCTACAGGTGATGACGAATTTGGTATTATTAATACAGCTGCAGATGTCACGTTTACAGTCCTTCTTCCTTTGCTAACAAAAGGCAATAATGAGTTAGATTACGGACAGTATATGCATATTGTTGACCTTTCAAGCAACCAATTGTCTGGAAAAATACCTTTAGAAGTATTTAGGCTCATTGCATTACAATCCTTGAACTTGTCACACAATCAATTAATGGGAACCATACCAGACGAAATTGGCAATATGAAACAGTTGGAATCCCTTGATTTCTCACATAACAAGCTTTCAGGAGAAATTCCACAAATCATGTCTGCTCTATCATTTCTTGAAGCCTTGAATCTCTCATTCAACAATTTCATGGGTCAAATCCCGCTAGGAACCCAGCTTCAGAGCTTTACGGCTCTTAGTTATATAGGAAATCCTGAGCTTTGTGGAGCTCCGCTTGTCAAGAGTTGCACCCATGATGAAGCACTCAATGTCAAAAAATTGATGGGAGATGATGAGAAAGGATCTGAGCTATTGGAGTGGTTCTATATGGGCTTGGGAGTTGGATTTGCAATCAGCTTCTGCTTAGTTTGTGGTTGCCTCTTCTTCAAAAGGACATGGAGGCATGCTTACTACAGATTTGTTGATGATGTGAAAGACCAAATTTATGTCAATCTAGTCTTAAAGTGCACACCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01633	59682	62333	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001633s00037208.1	PF08263.7	LRRNT_2	35	73	4.00E-11
Glyur001633s00037208.1	PF00560.28	LRR_1	221	242	0.027
Glyur001633s00037208.1	PF00560.28	LRR_1	293	315	0.012
Glyur001633s00037208.1	PF00560.28	LRR_1	508	520	0.49
Glyur001633s00037208.1	PF00560.28	LRR_1	625	644	0.37
Glyur001633s00037208.1	PF13855.1	LRR_8	695	751	5.20E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.028
SRR1783600	control	0.028
SRR1783602	moderate drought stress	0.014
SRR1811619	moderate drought stress	0.014

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.041
DRR006520	Root Summer glycyrrhizin high producing strain	0.041
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.877
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.138

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.528
SRR2868004	Drought Stress (root)	0.545
SRR2967015	Control (root)	0.055

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.269
SRR8400027	Control - Root	0.038