Gene detail information of Glyur001633s00037203 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G35860.1 | 2.00E-47 | GTP-binding 2 |
| NR | KGN58232.1 | 2.77E-57 | hypothetical protein Csa_3G597310 [Cucumis sativus] |
| COG | YP_007120524.1 | 7.00E-13 | small GTP-binding protein domain-containing protein [Microcoleus sp. PCC 7113] |
| Swissprot | tr|Q38922|RAB1B_ARATH | 1.00E-58 | Ras-related protein RABB1b |
| trEMBL | tr|A0A0A0LC04|A0A0A0LC04_CUCSA | 1.00E-57 | Uncharacterized protein {ECO:0000313|EMBL:KGN58232.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01633 | 2926 | 5498 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001633s00037203.1 | PF00071.17 | Ras | 78 | 159 | 1.70E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.999 |
| SRR1783600 | control | 19.633 |
| SRR1783602 | moderate drought stress | 9.646 |
| SRR1811619 | moderate drought stress | 9.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.895 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.568 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.691 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.540 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.701 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.047 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.124 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.478 |
| SRR2868004 | Drought Stress (root) | 4.163 |
| SRR2967015 | Control (root) | 2.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.031 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.732 |
| SRR8749028 | MeJA induced 9h | 0.589 |
| SRR8749029 | MeJA induced 9h | 0.853 |
| SRR8749030 | Uninduced | 0.743 |
| SRR8749031 | Uninduced | 0.271 |
| SRR8749032 | Uninduced | 0.472 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.670 |
| SRR8400027 | Control - Root | 2.083 |