Gene detail

Gene detail information of Glyur001631s00034409.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18380.1	2.00E-112	sequence-specific DNA binding transcription factors;sequence-specific DNA binding
NR	XP_003628534.1	0	hypothetical protein MTR_8g061040 [Medicago truncatula]
Swissprot	tr\|Q8RWJ7\|SHH2_ARATH	1.00E-147	Protein SAWADEE HOMEODOMAIN HOMOLOG 2
trEMBL	tr\|G7LDQ2\|G7LDQ2_MEDTR	0	Sequence-specific DNA-binding transcription factor {ECO:0000313\|EMBL:AET03010.1}

Sequence

Transcript Sequence

>Glyur001631s00034409.1
CATGAACATCGTTTTCGTACCCGTCGTACCTGTACCCCTATCTCGCCTCTTCTCTCCGTCTCCGCAGCAAGCACAACCAAGCTCTCAGCTTTAAAACTCTCATTCAATCCAAACGCTCCCTTTCTTTTTCTCCCCCCCCTTCTCTTCCAAACACAACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTGCTTCGTATCTATCTGGGATCCCTTGCTTCCTTTGTTCAATGGGTCGCCCACCCAGTAACGGAGGCCCAGCCTTCCGCTTCACTCAGCCCGAGGTGGCGGAAATGGAAGCTATTCTTCAAGAACACAACAATGCAATGCCAGCACGTGATGTCCTAGCAGCTCTTGCAGAGAAGTTCAGCGAATCACCAGACCGNAAAGGCAAGATTACAGTACAGATGAAGCAAGTTTGGAATTGGTTTCAAAATAAGCGGTATGCAATAAGGGCAAAATCTAGTAAGATTCCCGGGAAGTTAAATATCACACCTATGCCTCGGGATTATTCGGCCCCAGTAAGGAATATCCCTCAACCAACAGCTGCTCCAATTCCTGCTCCTTCAGCTTCAGTCCCAACAACAACAAAAGTAACTCCAGAAAATTCAGTTATGGAATTTGAAGCTAAATCTGGAAGGGATGGAGCATGGTATGATGTGGCTAACTTTCTATCACACAGATATTTGGAGACCAGTGATCCGGAAGTGCTGGTACGTTTTGCTGGTTTTGGACCTGAGGAAGATGAGTGGGTTAATGTGCGAAGGAATGTTAGGCCACGCTCTCTGCCATGTGAATCATCAGAATGTGTTGCAGTCCTCCCTGGAGATCTCATACTTTGTTTCCAGGAGGGTAAAGAGCAAGCCCTTTACTTTGATGCCCATGTCCTTGATGCTCAACGACGAAGNCATGATGTAAGAGGTTGTCGTTGTAGATTTTTGGTTCGTTATGATCATGATCAATCAGAGGAAATCGTGCCACTTAGGAAGGTCTGTCGTAGGCCCGAAACTGATTACAGATTACAACAACTTCATGCCGTAAATGATGCAGCGCCCATGGATCAGCAGAAGACTGGCATGGATTCGGCAAATGTTCATGCCATTAGGGTTACTAGTACTTCCGAAACAATGCCACTGCCAAAGCAGCAGCAGGTTGCAAATATTCANATCACAACGCCAGTTTTGCAAACAAATGTTTCTCTGCCCCCACAAAGCATGAACATGGATCCAAAGAAAGCTGAAACAAATGCTGATGTTCAAGCTGGAAATTCTGTCACCCCAGGCAGTGCCCCATTCACTAGCATCATTACTATAAGCAGTGTTCCTGAAGTGTCTACTCAGAACATGGCTGAAGGGAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01631	44030	61767	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001631s00034409.1	PF00046.24	Homeobox	13	74	0.00016

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.902
SRR1783600	control	6.731
SRR1783602	moderate drought stress	8.275
SRR1811619	moderate drought stress	8.589

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.986
DRR006520	Root Summer glycyrrhizin high producing strain	6.622
DRR006521	Root Winter glycyrrhizin high producing strain	10.412
DRR006522	Root Winter glycyrrhizin high producing strain	10.775
DRR006523	Root Summer glycyrrhizin low producing strain	8.454
DRR006524	Root Summer glycyrrhizin low producing strain	8.648
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.023
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.838

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.345
SRR2868004	Drought Stress (root)	11.430
SRR2967015	Control (root)	10.887

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.251
SRR9715740	Leaf	11.838
SRR9715741	Leaf	9.510
SRR9715739	Root	6.091
SRR9715742	Root	7.702
SRR9715743	Root	6.294

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.398
SRR8749028	MeJA induced 9h	14.273
SRR8749029	MeJA induced 9h	22.435
SRR8749030	Uninduced	7.861
SRR8749031	Uninduced	7.899
SRR8749032	Uninduced	8.696

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.402
SRR8400027	Control - Root	7.383