Gene detail

Gene detail information of Glyur001630s00027440

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G61210.1	2.00E-85	soluble N-ethylmaleimide-sensitive factor adaptor protein 33
NR	XP_004499490.1	8.03E-167	PREDICTED: SNAP25 homologous protein SNAP33-like [Cicer arietinum]
Swissprot	tr\|Q9S7P9\|SNP33_ARATH	1.00E-105	SNAP25 homologous protein SNAP33
trEMBL	tr\|I3SGH9\|I3SGH9_LOTJA	7.00E-158	Uncharacterized protein {ECO:0000313\|EMBL:AFK39371.1}

Sequence

Transcript Sequence

>Glyur001630s00027440.1
AATCAACAAAAGTCCACTGTGAAATTTTCAAATTTCTCTTACCTTGCTTACACACACAATCCCCCCTACCTCTGCTGTGACTTTTCTTAACGCGATTTTGCAGAGGTTGTGCACAAAACCATTCAACCCAACCCCTCTTAATATCTGTGGCCCTTCTATTCCTTCAACATATTCAGTGAATTCCCCCCACCCAGGGAGAAATTAATACACAAGATCATTGTTTCTTCAAAGGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATATTATTGTTTCTTTAAAGGTAGAAGGAGAGGGAGAGGATGTTTGGTTCAAAGAGATCTCCTTTGAAAGATGCTAAACCTAGCTCTTTTGAACCTGTCAGTAAGCATAACCACTTTGATTCTGATGAAGACACAAATGATAACAAAGTCAAAAAGCATGATTCCTCAAGGAAGACATCTTCTGGACACGCACTAGTTTCGGGAGAAACTAACACCAACCCCTTTGATGATGTTGATGCACTTGGCCACTCTTCATCGTCTTCTTATGCCCTTTCATCCGCCAATCGAAACAGGTATAAGAACGATTTCCATGATGCTGGGGGATTGGAGAGTCAGTCAGTGGAGGAATTGGAGAACTATGCTGTTTACAAGGCTGAAGAGACCACAAAATCGGTAAACAATTGTCTGAAGATAGCAGAGGAAATGAGAGAGGATGCTACCAAGACACTAGTGATGCTGCACCATCAGGGCGAGCAGATTACGAGGAGTCACAATGATGCTGCTGATATCGACCATGATTTAAGTCGGGGAGAAAAGCTTTTGGGAAGTCTTGGTGGCATGTTCTCCAAAACTTGGAAACCGAAGAAGACAGGCGCGATAACAGGCCCTGTAATATTTGGTGATGATCCAGTCAGAAGAAAGGGAAACCACTTGGAGCAGAGGGAGAAGTTAGGGTTGACTTCTTCTGCCCCTAAAGGGCAGTCAAAGCCGCGGAAAACACTTCCTGAGGCAACAAATGGACTTGAAAGAGTTGAGGTTTNCATCAACTTGGTTGAAAAGGGAAAGCAAGATGATGCATTGTCAGATATAAGTGATCTCTTGGGAGAACTGAAGTACATGGCCATTGACATGGGATCTGAAATTGATAAGGGTATCAAAGCCATGGACGGTTTTGACAAAGATATGGAGAAGTTGAACATCCGCGTGAATGGTGCTAATCAACGTACTCGTCGTTTACTTCGAAAATAGGGGTGCAGATCAGATCATTAGATTGGTTCCAACTTTTGCTATTTCCTTCCCCACTTGCACCCCTTCTCTTCATTATTCAATTGAAAGGACCTTCAAACTTTATAGAAAACTCTAGTTTCAATTATAGTAATGTACAATCCGCTTGTGATAATAATTTTTTCCCCTGAAATATATTGCATTGATTTGAGATTTTTATGATTTGATTATCAATATCATGATTCATACGCCACCTATCACCCACTAGTTGGCGTTACAGAAAAGTCACGCTGTGTGTTAAGAAGTGTTTCAACTTTCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01630	19691	22757	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001630s00027440.1	PF05739.14	SNARE	249	308	5.40E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.512
SRR1783600	control	21.365
SRR1783602	moderate drought stress	25.247
SRR1811619	moderate drought stress	25.098

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.101
DRR006520	Root Summer glycyrrhizin high producing strain	37.345
DRR006521	Root Winter glycyrrhizin high producing strain	34.131
DRR006522	Root Winter glycyrrhizin high producing strain	33.553
DRR006523	Root Summer glycyrrhizin low producing strain	73.392
DRR006524	Root Summer glycyrrhizin low producing strain	73.402
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.785
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.091

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	58.085
SRR2868004	Drought Stress (root)	95.437
SRR2967015	Control (root)	72.658

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	101.938
SRR9715740	Leaf	71.707
SRR9715741	Leaf	133.614
SRR9715739	Root	13.583
SRR9715742	Root	45.394
SRR9715743	Root	40.214

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	86.779
SRR8749028	MeJA induced 9h	132.248
SRR8749029	MeJA induced 9h	155.895
SRR8749030	Uninduced	516.635
SRR8749031	Uninduced	297.126
SRR8749032	Uninduced	167.642

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	51.156
SRR8400027	Control - Root	49.204