Gene detail information of Glyur001630s00027437 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G07810.1 | 1.00E-177 | SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein |
| NR | XP_004499416.1 | 0 | PREDICTED: DNA annealing helicase and endonuclease ZRANB3-like [Cicer arietinum] |
| COG | YP_005056395.1 | 7.00E-18 | HNH endonuclease [Granulicella mallensis MP5ACTX8] |
| Swissprot | tr|Q7G8Y3|ISW2_ORYSJ | 9.00E-13 | Probable chromatin-remodeling complex ATPase chain |
| trEMBL | tr|K7KW28|K7KW28_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G21530.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01630 | 4893 | 12145 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001630s00027437.1 | PF00271.26 | Helicase_C | 92 | 170 | 1.70E-07 |
| Glyur001630s00027437.1 | PF01844.18 | HNH | 602 | 635 | 9.80E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.946 |
| SRR1783600 | control | 2.911 |
| SRR1783602 | moderate drought stress | 2.119 |
| SRR1811619 | moderate drought stress | 2.017 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.722 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.724 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.443 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.347 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.380 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.521 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.954 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.126 |
| SRR2868004 | Drought Stress (root) | 3.427 |
| SRR2967015 | Control (root) | 3.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.618 |
| SRR9715740 | Leaf | 3.885 |
| SRR9715741 | Leaf | 4.079 |
| SRR9715739 | Root | 0.268 |
| SRR9715742 | Root | 3.425 |
| SRR9715743 | Root | 2.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.138 |
| SRR8749028 | MeJA induced 9h | 7.202 |
| SRR8749029 | MeJA induced 9h | 3.780 |
| SRR8749030 | Uninduced | 1.568 |
| SRR8749031 | Uninduced | 0.652 |
| SRR8749032 | Uninduced | 0.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.776 |
| SRR8400027 | Control - Root | 6.921 |