Gene detail

Gene detail information of Glyur001630s00027436.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G07810.1	4.00E-40	SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein
NR	KHN06903.1	1.22E-61	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Glycine soja]
COG	YP_002925001.1	1.00E-05	RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
trEMBL	tr\|V7CHJ6\|V7CHJ6_PHAVU	1.00E-55	Uncharacterized protein {ECO:0000313\|EMBL:ESW29647.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01630	1946	4156	+

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001630s00027436.1	PF00176.18	SNF2_N	8	57	5.40E-05

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.860
SRR1783600	control	0.741
SRR1783602	moderate drought stress	0.529
SRR1811619	moderate drought stress	0.874

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.876
DRR006520	Root Summer glycyrrhizin high producing strain	0.640
DRR006521	Root Winter glycyrrhizin high producing strain	0.560
DRR006522	Root Winter glycyrrhizin high producing strain	0.432
DRR006523	Root Summer glycyrrhizin low producing strain	4.017
DRR006524	Root Summer glycyrrhizin low producing strain	3.017
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.297
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.440

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.741
SRR2868004	Drought Stress (root)	2.159
SRR2967015	Control (root)	2.170

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.897
SRR9715740	Leaf	0.965
SRR9715741	Leaf	1.965
SRR9715739	Root	0.000
SRR9715742	Root	2.111
SRR9715743	Root	1.295

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.527
SRR8749028	MeJA induced 9h	4.667
SRR8749029	MeJA induced 9h	0.589
SRR8749030	Uninduced	0.256
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.499
SRR8400027	Control - Root	3.565