Gene detail information of Glyur001628s00038441 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G05220.2 | 4.00E-38 | Ribosomal S17 family protein |
| NR | XP_003519130.1 | 1.10E-49 | PREDICTED: 40S ribosomal protein S17-like [Glycine max] |
| COG | YP_004484922.1 | 1.00E-07 | 30S ribosomal protein S17 [Methanotorris igneus Kol 5] |
| Swissprot | tr|P49215|RS17_SOLLC | 5.00E-48 | 40S ribosomal protein S17 |
| trEMBL | tr|I1JGK9|I1JGK9_SOYBN | 4.00E-50 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G36070.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01628 | 34067 | 34387 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001628s00038441.1 | PF00833.13 | Ribosomal_S17e | 1 | 93 | 1.30E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.232 |
| SRR1783600 | control | 1.291 |
| SRR1783602 | moderate drought stress | 1.961 |
| SRR1811619 | moderate drought stress | 2.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.585 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.869 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.043 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.018 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.025 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.379 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.372 |
| SRR2868004 | Drought Stress (root) | 0.995 |
| SRR2967015 | Control (root) | 1.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.086 |
| SRR9715739 | Root | 2.045 |
| SRR9715742 | Root | 1.339 |
| SRR9715743 | Root | 1.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.843 |
| SRR8749028 | MeJA induced 9h | 0.267 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.186 |
| SRR8749032 | Uninduced | 0.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.424 |
| SRR8400027 | Control - Root | 8.657 |