Gene detail information of Glyur001627s00031867 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32180.1 | 2.00E-48 | plastid transcriptionally active 18 |
| NR | BAF98232.1 | 2.64E-82 | CM0545.540.nc [Lotus japonicus] |
| COG | YP_003528257.1 | 1.00E-13 | hypothetical protein Nhal_2804 [Nitrosococcus halophilus Nc 4] |
| trEMBL | tr|B0BLJ6|B0BLJ6_LOTJA | 1.00E-82 | Uncharacterized protein {ECO:0000313|EMBL:AFK45752.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01627 | 51719 | 52162 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001627s00031867.1 | PF05899.7 | Cupin_3 | 64 | 138 | 5.90E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.377 |
| SRR1783600 | control | 2.806 |
| SRR1783602 | moderate drought stress | 2.280 |
| SRR1811619 | moderate drought stress | 3.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.279 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.491 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.320 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.198 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.980 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.633 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.536 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.516 |
| SRR2868004 | Drought Stress (root) | 6.032 |
| SRR2967015 | Control (root) | 5.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.278 |
| SRR9715740 | Leaf | 1.701 |
| SRR9715741 | Leaf | 1.435 |
| SRR9715739 | Root | 0.862 |
| SRR9715742 | Root | 0.382 |
| SRR9715743 | Root | 1.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.242 |
| SRR8749028 | MeJA induced 9h | 2.820 |
| SRR8749029 | MeJA induced 9h | 3.793 |
| SRR8749030 | Uninduced | 2.303 |
| SRR8749031 | Uninduced | 2.395 |
| SRR8749032 | Uninduced | 3.963 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.276 |
| SRR8400027 | Control - Root | 1.220 |