Gene detail information of Glyur001627s00031864 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32180.1 | 9.00E-39 | plastid transcriptionally active 18 |
| NR | BAF98232.1 | 2.93E-75 | CM0545.540.nc [Lotus japonicus] |
| COG | YP_003528257.1 | 1.00E-09 | hypothetical protein Nhal_2804 [Nitrosococcus halophilus Nc 4] |
| trEMBL | tr|B0BLJ6|B0BLJ6_LOTJA | 1.00E-75 | Uncharacterized protein {ECO:0000313|EMBL:AFK45752.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01627 | 37889 | 38334 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001627s00031864.1 | PF05899.7 | Cupin_3 | 64 | 131 | 1.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.090 |
| SRR1783600 | control | 1.292 |
| SRR1783602 | moderate drought stress | 0.875 |
| SRR1811619 | moderate drought stress | 1.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.815 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.148 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.609 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.939 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.258 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.617 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.584 |
| SRR9715740 | Leaf | 7.700 |
| SRR9715741 | Leaf | 4.588 |
| SRR9715739 | Root | 3.827 |
| SRR9715742 | Root | 7.177 |
| SRR9715743 | Root | 9.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.794 |
| SRR8400027 | Control - Root | 14.941 |