Gene detail

Gene detail information of Glyur001627s00031857

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G21630.1	5.00E-101	chitin elicitor receptor kinase 1
NR	AAQ73158.1	6.14E-163	LysM domain-containing receptor-like kinase 7 [Medicago truncatula]
COG	NP_864467.1	2.00E-17	serine/threonine-protein kinase pknA [Rhodopirellula baltica SH 1]
Swissprot	tr\|A8R7E6\|CERK1_ARATH	2.00E-121	Chitin elicitor receptor kinase 1 (Precursor)
trEMBL	tr\|Q6UD74\|Q6UD74_MEDTR	2.00E-163	LysM domain-containing receptor-like kinase 7 {ECO:0000313\|EMBL:AAQ73158.1}

Sequence

Transcript Sequence

>Glyur001627s00031857.1
TTCTTTTCCAAACATTAATAGTACAGAGTTTCAAATTTGTTTATGTTTCTCTTCTCCAGCACCAGCACCCATATGCGTATTCAACTTTTGTGTTCCTCTGAATNGGTTACTTTTCACGAGCTTTTAAATGGAACCCAGTTTCAGAATACCAGTTCTGTGCTTGTTTCTGGCCTCTATATCCTTCACAGCACAATCAAAGTGTAGCAAGACATGTGATTTAGCTTTAGCTTCCTACTACCTAGATGGTTCTAACCTGACATATGTTTCAAAGCTCATGAAATCCGAGGATGTTACAAAACCAGAAGATATTGTCAGCTACAACACAGACACAATAGAAAACAAAGACTCTGTCCAATCCAATACCAGAGTGAACGTTCCTTTCCCTTGTGATTGCATCAATGATGAGTTTTTAGGCCACACGTTCCAATACCAGGTTGTGAGAGGAGACACCTATTTGTCTGTTGCCACTCAGAACTATTCCAATTTGACCACTGCAGAGGAGTTGCAGGGCTTCAACAGCTACCCTTCAAATAATATCCCTGATAGTGCAACTCTTAATGTCACCATTAACTGTTCTTGTGGGAATAGTGAGGTTTCCGTGGATTATGGGTTGTTCATCACATACCCTCTTAGACCTGAGGATTCTTTGCAGTCAATTGCTAACAGCACCAAACTTGAGCCTGAGTTGCTGCAAAAGTACAACCCGGGTGTGAATTTTAGCCAAGGGAGTGGCCTGGTTTATATTCCTGGGAAAGACCAAAACCGTAACTATGTGCCATTTCACCTCAGCACTGGAGGAGGTTTGACCTTCTAACTACACAGAAANTTGTTTTTATTGATGATTGTTATACCTGAGTTTGATATTCATATCAGATACAAGGTAAAGATATCCTTAAAGTAGAATGCAAACCTACAATTTAAGCAGGTCTATCAGGTGGGGCTATCACTGGAATAGCTGTTGGAGTAGTAGCAGGACTTCTGCTATTGGCATATTGTGTGTATGTTACATATTATAGAAGGAAGAAGATATGGAAGCAAAAATTACTCTCAGAAGAATCCAACACAAATTCTGCTCTAGTTNAGAAAGATGAAGTCTCTGGTAATGCTAAACATGAAANATCAGATTCTGGTGGTCCTGCTGCTGCAGGTGGTACTAACACCATTGGCATTAGGGTGGACAAATCAGCTGAGTTTTCATATGAAGAACTTGCCAATGCCACAAATAACTTCAGCATGACTAACAAAATTGGTCAAGGTGGTTTTGGNGAAGTCTATTATGCAGAGCTGAATGGCGAGAAAGCTGCAATAAAAANGATGGACATGAAAGCATCAAAGGAATTTCTTGCTGAGCTGAAGGTGTTGACACGTGTTCATCACTTGAACCTGGTACGGTTGATTGGATATTGTGTTGAGGGACATCTTTTCCTTGTCTATGAATACATTGAGAATGGAAACTTAGGCCAACATCTACGTAAAAATACAGATGGAGAACCTTTGCCATGGCNCACCAGGGTTAAAATTGCTCTGGATTCAGCTAGAGGTCTTGAATACATTCATGAACATACGGTTGCAGACTTTGGATTAACCAAGCTGATTGAAGCTGGAAGTTCATCAGTTCCTACTGCTAATATGGCAGGCACATTTGGTTACATGCCACCNGAATATGCATATGGCAGTGTTTCCCCCAAAATTGATGTATATGCTTTTGGGGTTGTTCTTTTTGAACTAATTTCTGCTAAAGAAGCTGTGATCAAGGGTGGTGAATCCGGTGTTGCATTAAAAGGCCTTGTAGCTTTGTTTGATGAAGTATTTGATCAGCCAGATCCTATAGAAGGTCTTAAAAAACTGGTGGATCCTAGGCTTGGAGATAATTACTCAATTGATTCAGTTTTCAAGATGGCACAACTTGCCAAAGCATGTACAGAGAGTGATCCACAAAGACGTCCAAATATGAGCTATGTTGTGGTTGCTCTTACCACACTAAATTCAACTACTGAGGAATGGGATATTGCTTCCATATACAAAAATCCAGCTCTTGCAAATCTAATGTCTGGAAGATGATATAGGATAAGAGTAGGAATTTAGGATACAAACTAGCCGATGGGTCCATATAAAATACANGATTTTCTTTCTAATATAAACAGTAAAAAAAGTCCAACAAACAAAATAATAATTTTGAGAAATAAAAAATTCTGAGAATTGACACATGTCCCAGTTTGGGAGCCGACATGTGTCCCAATATATAACTTACTTTTCTCATATAGTAATTGATAAGTAATTGTAATTGATGTTACATTGTAATATAAATTCTTCTGTTTCAATGGGACAAGTGAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01627	1295	6715	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.1.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001627s00031857.1	PF07714.12	Pkinase_Tyr	2	111	2.70E-21
Glyur001627s00031857.1	PF07714.12	Pkinase_Tyr	112	245	3.10E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.827
SRR1783600	control	1.866
SRR1783602	moderate drought stress	1.171
SRR1811619	moderate drought stress	1.073

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.094
DRR006520	Root Summer glycyrrhizin high producing strain	5.319
DRR006521	Root Winter glycyrrhizin high producing strain	7.045
DRR006522	Root Winter glycyrrhizin high producing strain	7.260
DRR006523	Root Summer glycyrrhizin low producing strain	7.298
DRR006524	Root Summer glycyrrhizin low producing strain	7.431
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.951
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.986

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.350
SRR2868004	Drought Stress (root)	13.717
SRR2967015	Control (root)	9.209

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.677
SRR9715740	Leaf	3.298
SRR9715741	Leaf	5.685
SRR9715739	Root	0.709
SRR9715742	Root	4.399
SRR9715743	Root	3.890

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.952
SRR8749028	MeJA induced 9h	21.615
SRR8749029	MeJA induced 9h	8.937
SRR8749030	Uninduced	15.807
SRR8749031	Uninduced	19.707
SRR8749032	Uninduced	11.235

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.875
SRR8400027	Control - Root	10.704