Gene detail information of Glyur001625s00036562 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G36930.1 | 4.00E-65 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | AES86810.2 | 0 | TIR-NBS-LRR class disease resistance protein [Medicago truncatula] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 2.00E-60 | TMV resistance protein N |
| trEMBL | tr|G7JMY4|G7JMY4_MEDTR | 0 | TIR-NBS-LRR class disease resistance protein {ECO:0000313|EMBL:AES86810.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01625 | 36031 | 44984 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001625s00036562.1 | PF01582.15 | TIR | 51 | 165 | 1.00E-31 |
| Glyur001625s00036562.1 | PF00931.17 | NB-ARC | 230 | 310 | 1.50E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.888 |
| SRR1783600 | control | 4.797 |
| SRR1783602 | moderate drought stress | 5.661 |
| SRR1811619 | moderate drought stress | 5.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.190 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.970 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.194 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.220 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.802 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.827 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.966 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.955 |
| SRR2868004 | Drought Stress (root) | 8.536 |
| SRR2967015 | Control (root) | 10.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.015 |
| SRR9715740 | Leaf | 0.138 |
| SRR9715741 | Leaf | 0.084 |
| SRR9715739 | Root | 0.043 |
| SRR9715742 | Root | 0.054 |
| SRR9715743 | Root | 0.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.011 |
| SRR8749028 | MeJA induced 9h | 3.000 |
| SRR8749029 | MeJA induced 9h | 0.487 |
| SRR8749030 | Uninduced | 1.028 |
| SRR8749031 | Uninduced | 0.585 |
| SRR8749032 | Uninduced | 0.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.894 |
| SRR8400027 | Control - Root | 9.105 |