Gene detail

Gene detail information of Glyur001624s00036980

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G09680.1	1.00E-149	conserved telomere maintenance component 1
NR	XP_004511199.1	0	PREDICTED: CST complex subunit CTC1-like isoform X1 [Cicer arietinum]
Swissprot	tr\|D0EL35\|CTC1_ARATH	0	CST complex subunit CTC1
trEMBL	tr\|K7L8G1\|K7L8G1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G25710.2}

Sequence

Transcript Sequence

>Glyur001624s00036980.1
ATGCCAATAGAAGACGCAGAGACTGTGGGGCTAGCAGACCTCCTTCACTCCCCTCGACCTCTCACCGCCTCCGCCTCTCTCCCCTTTCTCCCTCCTCCTCCTCCTCCNCCTCAACGCCCCACCCACCACCGCGTTCTCTCCGCCCTCAACCGCCCAACCGTCATCGTCGGAACCCTAACCCTCCCCAAGCACACTTATCCCTCCATCCATTCCCCTTGCTCCTGCTTCCGATTCTCCGACGGCTCCGCCACAGTCTGCTGCGACGTCCTNTCCTTCTCCACCTCCGCCGTCGGCAAGGAAATCCGCGTCACCGCCTGGAATTTCATCCCGTTCAAGCACCCCGGCGCCCGCGGCGGCGGCAGTGGCTTCTTGGAGATCATCAAGTGGCATTTTTCTGATCCCAACGAGGAGGAATCAAGCCTGGTGGATTCGCTTCCGGTTGCGGATAATTGTCCGGCCGGCACCGGCGGTGGCAAGTATTCCAGGGCCGTCCACGGAGTGNTGGAGTCGGTCGGCCCTCTTTCGGTGGTCCCNTGCGTCAACGCCCCGAGTTGCTCCGATTTGAATTCGGGTTCTAAGGTGAACTTGCTTGGGTTTTTGGTACAGTTGGTGTGTTGTGAGTGCAGGTTGTGTGGTTCCAGGGATTTAACAAACAACTTGAGGAGTGGTTCTTTTGTAATTGAGAATAGGAATAATGGCCATTCTTTCACCAAGATGGAGATTGTGTATTTTTGTGGCAATGCATCTTCGTTTCACCCTGCAATCACCAAGCTGATTGGTAACCGTGTTGTGGTTTTGGGTTTGAAGAAGAAGCTGGTACACATGACCAAGGAGGAGTCTTGTTTGATGTATGTGACCGGAGATGAGACGGTCCTGCGCGTTTGTCCGCGTTCGGAGGAATCGGCGTCATGCTTGAAGAGGAGTGAGATGAAGGGGAGGGGTGAGTGTGGTTCCTATACTGGTGTGATTAAAGGTGTTTACATGCAAGGGATGGCTTTGGAGTTGGACCATGATATATCTGTGAGAAATGTCCATTTTGTGGATCCGAAGTTTTCGTGGACTAAAGTAATTATTCTTGGGGCTTGCGTCAAGACTAGCATTATCGTGGAATCTTTCTCCCCGCTGGAAACTGTGTGTAATGTAGTTTTGCAGTCTACGAGTATGCTAGCAAAGTTCATTCAGTCATTACCATTTTCAGCAAGACTCTGGGTATTACTTCTCGTGTCAAGCTTACGTAAAAAGTTTGCTGGTATCTTATCGGACAAGGAGATTTTGGGATCAAAACATAAAGAAGGGCTAGCTCAGATGCACGCTAGTTCACTGTTATCTCAGTCAGTGTTTCAAACTCAGCATGGTGCTTTCATGGGGCTGTGTAAACATGACTTCAATGGCTGCGGTAGAGAAATGCATTGCGGTTTTCTGAAATTGGTAGTACCGATGTCTATCTTCATCTGCCACTGTAAAGACACCTTAGTAAGAATGCTAAAATCAGAAAATCAAAATCACTGTAAATTGTTGTCTGTTGGCAATCATTTCAGTATTTTATCACGTCAAGCCAGATATAATAGTAGATCAGTTAGAAGGATCATTCGAAGTGAAGATGTAGGCGTTGTTTTGCTTGGATATCTAAAGTTTGATCAATTGACTAGAAGACTGCAGCTGGTTGATGCGACTGGTGGAATTGATGTTCTTATACCAGACCTTCCCTTAACTTGGAATCCCAATGACATATTTGAGGTGACAGACTATGATGTTGTTGTGAATGGCATAGGTGAACTCGTGGATCAGTTGGAATTGCTTGAGAGTGAATCATTATCATGCAGAGTGATCTTTAATTGTACCCAGGCGGAAAGGGAGTTAAGCACATCATTTTTTGTTTTCTGTCTTTGGAAGAATGCTAAATGCAGAAAATTTCCCCTTTACCCTCATATCAATAGTAAGAATGAATCTAAGATACTTGAACCTGGATCCTACTATTTACTCAGGGTATCTCACAAATTTCCTCTGCAAGAAAAGTATTCTAATAATATGAGATCTGACAAGTCAAGTACTTTTGTTGAAGCTATACTTCTGCCTTACATTTTATTGCTTGCTGGGAAGAGTGGAATTTCACATCCATGCAATGTTTCTAAGGACAAGAGAACGGAACTATCAAAATATTGTTTCAGTGGTAATAAGGAAGAGCAAGTTTCCATTAAGAGGCAGAAACTTATTAAGGAATCAGTAAATACATCAAAGGATGAGTTTCATACTTCCATCTATGAGCTGAATGCTTGCTCTAATTCATTCAGGGAGTCAAAAGAGAACAAAAAATGTGTCGCTTTGAGTTCTCATGATATGTCTTGTCTGGTTACTTTTAGAAGCCTTGAAAAAGAGAATGTGGTTTGCCCAGCTTTGTTGCGCTCCACATCACCNATAAAAGATACGAGTTTTAATTCAAAACCTACTGCAAGGAAAATCTTGCTTGAGTTCTCATCNGATATGTTTTTGAAGTATCAGATTGGTGGTTATTACATCATAGAACATAATANAAATGATTGCTTCAGCACCATGAATGATGCTGGCTTTGGTAGCAGCGGCACTGCTAAATTTCTTGTTGATTCTGGAAAACATATCTGGAGCCTTTCATTTATTTCTGATGAGGTTCTTTTCAATTATAAATCAGTATATACATCTGCAAAAAATTCTTCATCTCCTACCATTGATAGGGTTATGCCTGAAGATCAAATTGAACGGCAACTGCTAAGGTCCAATGATGATTCTTCAGGTGTCTGTTCAGATGTTTGTCTTTATCTCCCTGTCAATCTTANGGATCTCCTGGAAGAAAATATTATGGAATCAAAATATAGTCAAATCCAGAAATTTGCAATATCAGAAGAGAGTGCTAACATTTCTTTCAACACCGGGACTGTGGTTGCTAGGCCTACTTTTTGTTCTGGTCCTCTGAGTTCAAACTGCTTGTTTCCTGAGGGTAACTTGATTTCTCTCAAGGGAAATGTGGTTGACATTCATGACATCAGCTCTAGTTTTTGCGATTCATGCTCAAGTGGTGCAAGCCTTGGTGCTCTTCAAATGAAAGGCCTTGTTGGGAATAGAAGCAGTTTCTGCATTCATGTTTTAGTGCATCATCATATTGTGAATATTTTTGGTTCTATAACTAAACATGCTTTCCCTACCGGTTTCGGACCTGGTGTAACTGCAACATTTCATCGAATTCTTGATGCAAGGGCCGAAAATAAATTTATGTTGCTCCCTGTGTCATTTATTGTAATAAATTCGATAAAAGTATATGATAAGCAATGCAGTGACAGGTTCTCCACTTTAGGGCCTCCAAAAGATGCATTCAATGCTTGTCAGGATTCTTTCTCTTGTTTGATTTCCCAACTACCTCAGTGCCCGAGTCACAAGAAAATAGTCCTTCGATGCAGGGTTGTTGCAGTTATTGTTTTAGTTCTAGAGAGGAAGACTACAAGTTTTNATGCTGAAACAAAAATTAATGCTAAGGGGACTCTTTTGGACATTCCACTTGCTGGGTTTTTGTTGGATGATGGGTCATCATCATGTTGTTGCTGGGCTAATGCTGAAAGGGCAGCAACCTTGTTGAGACTGCAAGAAGAACCCACCACATCTTATCATCTCGGGAGAATTTTGAAGAATTACAAGAGAATTACTGTGAAAAACCATGGGTCATTTGTTGATTCTCCTTACCAAGATCTTGTTGTTTCTGTTACTTCCAGTAATGCTCTTAGCAGTTCTGATGAAAACCTCGTCAAGTTCATAATCTTCAATGCATGTGTTGGTAGAACATGGAATGTAGTTGCTAGTGTGATGGATGCAGAGGAAGTTAGCCAGTTGGAGAAAGAATACCTTAGAGAAATGGTGAATATGCAAACCATNCAGAATATATGGGCTACAGAAGTCTCTTGCCCACGCACTCTGGCTGAAGCAAGGAACATGATTCAGGAACTTTCGAAAAGTTAG

Protein Sequence

>Glyur001624s00036980.1
MPIEDAETVGLADLLHSPRPLTASASLPFLPPPPPPPQRPTHHRVLSALNRPTVIVGTLTLPKHTYPSIHSPCSCFRFSDGSATVCCDVLSFSTSAVGKEIRVTAWNFIPFKHPGARGGGSGFLEIIKWHFSDPNEEESSLVDSLPVADNCPAGTGGGKYSRAVHGVXESVGPLSVVPCVNAPSCSDLNSGSKVNLLGFLVQLVCCECRLCGSRDLTNNLRSGSFVIENRNNGHSFTKMEIVYFCGNASSFHPAITKLIGNRVVVLGLKKKLVHMTKEESCLMYVTGDETVLRVCPRSEESASCLKRSEMKGRGECGSYTGVIKGVYMQGMALELDHDISVRNVHFVDPKFSWTKVIILGACVKTSIIVESFSPLETVCNVVLQSTSMLAKFIQSLPFSARLWVLLLVSSLRKKFAGILSDKEILGSKHKEGLAQMHASSLLSQSVFQTQHGAFMGLCKHDFNGCGREMHCGFLKLVVPMSIFICHCKDTLVRMLKSENQNHCKLLSVGNHFSILSRQARYNSRSVRRIIRSEDVGVVLLGYLKFDQLTRRLQLVDATGGIDVLIPDLPLTWNPNDIFEVTDYDVVVNGIGELVDQLELLESESLSCRVIFNCTQAERELSTSFFVFCLWKNAKCRKFPLYPHINSKNESKILEPGSYYLLRVSHKFPLQEKYSNNMRSDKSSTFVEAILLPYILLLAGKSGISHPCNVSKDKRTELSKYCFSGNKEEQVSIKRQKLIKESVNTSKDEFHTSIYELNACSNSFRESKENKKCVALSSHDMSCLVTFRSLEKENVVCPALLRSTSPIKDTSFNSKPTARKILLEFSSDMFLKYQIGGYYIIEHNXNDCFSTMNDAGFGSSGTAKFLVDSGKHIWSLSFISDEVLFNYKSVYTSAKNSSSPTIDRVMPEDQIERQLLRSNDDSSGVCSDVCLYLPVNLXDLLEENIMESKYSQIQKFAISEESANISFNTGTVVARPTFCSGPLSSNCLFPEGNLISLKGNVVDIHDISSSFCDSCSSGASLGALQMKGLVGNRSSFCIHVLVHHHIVNIFGSITKHAFPTGFGPGVTATFHRILDARAENKFMLLPVSFIVINSIKVYDKQCSDRFSTLGPPKDAFNACQDSFSCLISQLPQCPSHKKIVLRCRVVAVIVLVLERKTTSFXAETKINAKGTLLDIPLAGFLLDDGSSSCCCWANAERAATLLRLQEEPTTSYHLGRILKNYKRITVKNHGSFVDSPYQDLVVSVTSSNALSSSDENLVKFIIFNACVGRTWNVVASVMDAEEVSQLEKEYLREMVNMQTXQNIWATEVSCPRTLAEARNMIQELSKS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01624	30018	40778	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000723 telomere maintenance

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001624s00036980.1	PF15491.1	CTC1_2	48	339	3.70E-82

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.078
SRR1783600	control	1.063
SRR1783602	moderate drought stress	0.805
SRR1811619	moderate drought stress	0.797

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.830
DRR006520	Root Summer glycyrrhizin high producing strain	0.870
DRR006521	Root Winter glycyrrhizin high producing strain	0.445
DRR006522	Root Winter glycyrrhizin high producing strain	0.420
DRR006523	Root Summer glycyrrhizin low producing strain	1.960
DRR006524	Root Summer glycyrrhizin low producing strain	2.002
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.270
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.279

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.934
SRR2868004	Drought Stress (root)	2.912
SRR2967015	Control (root)	2.808

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.634
SRR9715740	Leaf	0.435
SRR9715741	Leaf	0.657
SRR9715739	Root	0.218
SRR9715742	Root	1.054
SRR9715743	Root	0.640

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.736
SRR8749028	MeJA induced 9h	2.287
SRR8749029	MeJA induced 9h	1.434
SRR8749030	Uninduced	0.697
SRR8749031	Uninduced	0.647
SRR8749032	Uninduced	0.501

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.407
SRR8400027	Control - Root	2.573