Gene detail information of Glyur001621s00038619 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G16720.1 | 1.00E-71 | high chlorophyll fluorescence phenotype 173 |
| NR | KHN39390.1 | 1.15E-89 | Hypothetical protein glysoja_018162 [Glycine soja] |
| COG | YP_007146390.1 | 7.00E-15 | NmrA-like family protein [Cylindrospermum stagnale PCC 7417] |
| Swissprot | tr|Q94EG6|Y5224_ARATH | 1.00E-08 | Uncharacterized protein At5g02240 |
| trEMBL | tr|I1KVW6|I1KVW6_SOYBN | 5.00E-90 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G24280.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01621 | 28462 | 30939 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001621s00038619.1 | PF13460.1 | NAD_binding_10 | 10 | 90 | 5.50E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.627 |
| SRR1783600 | control | 2.819 |
| SRR1783602 | moderate drought stress | 3.680 |
| SRR1811619 | moderate drought stress | 3.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.373 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.690 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.645 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.635 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.107 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.111 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 45.149 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 43.990 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.822 |
| SRR2868004 | Drought Stress (root) | 13.374 |
| SRR2967015 | Control (root) | 9.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 83.528 |
| SRR9715740 | Leaf | 123.559 |
| SRR9715741 | Leaf | 65.514 |
| SRR9715739 | Root | 0.673 |
| SRR9715742 | Root | 2.830 |
| SRR9715743 | Root | 1.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.638 |
| SRR8749028 | MeJA induced 9h | 1.747 |
| SRR8749029 | MeJA induced 9h | 2.122 |
| SRR8749030 | Uninduced | 0.339 |
| SRR8749031 | Uninduced | 0.209 |
| SRR8749032 | Uninduced | 0.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.490 |
| SRR8400027 | Control - Root | 6.754 |