Gene detail

Gene detail information of Glyur001621s00038618

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13050.1	3.00E-169	Major facilitator superfamily protein
NR	KHN38113.1	0	Organic cation/carnitine transporter 7 [Glycine soja]
COG	YP_644637.1	1.00E-74	major facilitator transporter [Rubrobacter xylanophilus DSM 9941]
Swissprot	tr\|Q940M4\|OCT7_ARATH	0	Organic cation/carnitine transporter 7
trEMBL	tr\|I1KVW4\|I1KVW4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G24250.1}

Sequence

Transcript Sequence

>Glyur001621s00038618.1
AAAAAAAAATGAAGGCAAAGAAAAGGAAATGGCCGAAGCACCACTGCACCAGGTGACTGACTATGCACGTCGTCGGTCAACGGTACGACCGGCGAAAGTGGAATGAATGTAATAAAAATAAAATCAAAATGAACGAGTTTCAAATTCAACTCTCTATTTCTTCAATTCAAATCCTCCAACCAAACATATACACACACACAATCATATGTTATGTATTTTGACTACTCTCTCTGAAACAAAAGGAAGATCCAGCGTCTCCAACATTACATAGCTTTCTGTCTTTCCAAAACGAGATGATGGGGGATGAAGGCCCAAGCTACACAGTAGATGATGCTCTTGTGGCTTTGGGTTTTGGGAATTTCCAAATTCTCGTGCTTGCTTATGCTGGCGTTGGTTGGATTTCAGAAGCAATGGAAATGATGCTACTCTCTTTTGTAGGCCCTGCAGTTCAATCTGCATGGAGTCTTTCTGCTCATGAAGAGAGCTTGATAACCAGTGCAGTTTTTGCTGGCATGTTAATCGGGGCATACTCATGGGGCATTGTTTCAGATAAACATGGAAGGAGGAAAGGGTTCCTTATCACAGCAACAGTTACTGCCATGGCTGGTTTTCTGAGTGCATTTTCTCCTAACTATACATCATTAATTGTCCTTCGTTCTCTGGTTGGTATTGGTTTGGGAGGTGGCCCTGTATTATCATCTTGGTTTCTAGAGTTCGTTCCAGCCCCTAATAGAGGTACCTGGATGGTTGTCTTTTCAGCATTTTGGACTATTGGCACAATTTTTGAGGCATCACTTGCATGGATTGTGATGCCAAAACTGGGTTGGAGATGGCTTCTTGCACTATCGTCCCTTCCCACATCTTTCCTCCTTCTGTTCTACAAAGTAACACCTGAGTCACCAAGATACCTATGCTTGAAAGGTAGAACAACTGATGCAATTAATGTTTTGGAGAAAATAGCTAGAGTAAATGGCACAAAACTTCCTTCTGGTATCCTTGTTTCTGACCATCAAATTGAGCTACACAAAATTGATAACCTTTCAGAAGACACACGTTTACTCTCGCCAAGAAAAAATGATGTTGAATCTCCTAAAGGAATGGTTTCCAATTTAGGTGGTATCTCATCACTGCTAATGCTTCTCTCACCAAAATTAGCAAGGTCAACCCTTCTATTATGGGCAGTGTTCTTTGGTAATGCTTTTTCATATTATGGCCTTGTTTTGTTGACCTCTGAGTTGCATGGACATAGTAAATGCATCCCACATAAATTGCAGACAGAGAAGTCCCAGGACGTTAGATACAAAGGTGTTTTTATTGCTAGTTTTGCAGAGCTACCTGGGCTCCTTTTGTCAGCCGCAGCAATAGATAAAATTGGTCGTAAGCTATCAATGTCAACCATGTTCTTCATGTGTTGTATTTTCCTTCTCCCATTAATATTCTACCTGCCTGAANGCCTAACAACGGGCCTTTTATTTGGAGCTCGCATATGCATCACAGTAACCTTCACAATCGTGTATATATATGCACCAGAGATATACCCCACATCAGTGAGAACAACTGGTGTCGGAATCGCAAGCTCAGTGGGCAGAATTGGTGGAATGCTATGTCCATTGGTGGCAGTGGGTTTAGTACATGGTTGTCATCAAACTGCAGCTATCCTTCTGTTTGAAATTGTAGCTCTTCTTTCAGGAATATGCGTTATGTTCTTTCCGGTTGAGACCATGGGCCAAGAACTGCGAGATAGTGTGTCAACTCATGAAAACATATAGTATAGACCAAAAAATATTTCGCTTTGGCCCTTGTNGTACGTGGAAGAAGTCTGCTCTTTCCACGAATTTCTTATTTCNTTATATTTGAAATAATTCAATTATTTCTTTGCACGTTTTGATTTTTAAATGATGTGTTTGGATTTTGGATGCATATTTTTGAGTAAATCGGAAGTGAATCATTGACAATGATTCATTGTCAACGAAAATAAAATCCACAATGTGAATGGAAATATGGAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01621	13191	19328	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001621s00038618.1	PF00083.19	Sugar_tr	59	481	8.90E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.985
SRR1783600	control	12.260
SRR1783602	moderate drought stress	9.301
SRR1811619	moderate drought stress	9.436

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.610
DRR006520	Root Summer glycyrrhizin high producing strain	9.502
DRR006521	Root Winter glycyrrhizin high producing strain	7.483
DRR006522	Root Winter glycyrrhizin high producing strain	7.366
DRR006523	Root Summer glycyrrhizin low producing strain	9.011
DRR006524	Root Summer glycyrrhizin low producing strain	8.914
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.752
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.686

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.901
SRR2868004	Drought Stress (root)	33.130
SRR2967015	Control (root)	27.303

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.200
SRR9715740	Leaf	11.401
SRR9715741	Leaf	13.181
SRR9715739	Root	6.198
SRR9715742	Root	8.325
SRR9715743	Root	8.019

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.913
SRR8749028	MeJA induced 9h	12.396
SRR8749029	MeJA induced 9h	5.264
SRR8749030	Uninduced	12.680
SRR8749031	Uninduced	11.136
SRR8749032	Uninduced	5.643

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.086
SRR8400027	Control - Root	17.269