Gene detail

Gene detail information of Glyur001619s00026430

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G43230.1	6.00E-87
NR	XP_004495366.1	1.04E-157	PREDICTED: uncharacterized protein LOC101504250 isoform X1 [Cicer arietinum]
trEMBL	tr\|G7I4V5\|G7I4V5_MEDTR	9.00E-157	Uncharacterized protein {ECO:0000313\|EMBL:AES61091.1}

Sequence

Transcript Sequence

>Glyur001619s00026430.1
ATGGTGATCAAAATTCGGGTTCTCTGGCCTCAAGTGCCATCGATGGAAAAAGTTGAATTCAATGAGCCTTTCAGGCTCCCAGTACTTATGTGGAGAAAAGCATCCAAGAAAGGCAAAAACTGTGAAAGCTTCCAGAAGAATTGCTTAGAGTTTCACTTGTATGACAGGACAGCAAAGAGCCAACTCTTGGGATCAGCCACCATAAACCTTGTAGATTTTGGAAATATTAAGGAAACTAAAGCAGTAAGCGTTCAGTTGAACTGCAACAGGAGTTTCAGGCACGTGGCACAACCGTTTCTTCATGTTAGTATTCAGCCATTTGATGTAAACTCATCACCAAACAGCAACTTGTCGAAAGAGTTGTCACTGGACAGGGAAGGAAGTGAATCTGTATCACAGTCACTTAAAGATGATGATGATGATGATGTTGAAATTGCCTCTTTTACCGATGATTACGACGATGATGACATTCCTCCAAATACCTTGCAAACTATCAGATCTGCTTCAGAGACCACCGGAGTTTTGGCCCCTCTGAAAGAAAAACGATCTAATGGAGAATTTGTTCTACCCTCAGAAAGTACTACTTCTAGCTTGCTTGGAAACACAGAGGCTGAAGCATGCACACAGGTCAATGGCATCAAATCTCCCTCTTCATCTGTGGTCCTGTGCTCAGATATGGGAAATGCTGCAAATGGCAGGGCTTCACCTAAAATTTCTANGAAAAGTGTCAAGGTTGATGATGCAAGTTCTGAATTTCAAGAACGCATTCAACAATCCCGTGGACAAAATATCACCAAGGGTGATATGTTCGACGCCATATCTCCAGCTTCATGCACTTCATCGAGTAAGAAACCACACTTCGAAAGATCTTCCCAAATCCCAATCTCAATTTGCTGTTTGACATTCTGGTTCTCAAACTTGATACTGCTGAGATCAATTGTGAGCAAAGGAGTTGGAAATATACACCTTGGTGCTGGTCCTTGCATCAATAGTGAATATGAAGAAGAAAAAGAAGATATAGAAAGACACTATCATAGCTGTAAGGATCGAGAGACATTTTTAGTTGCATTGGAAAAGGTNGAAGCATGGATATTCACTCGAATTGTTGAGTCAGTGTGGTGGCAGAGCTCTGGCTCTAGGAAATTATATGGGAGGAAATATCTTATTGGTGATCAAGATCAAGGAAACTTTTCTATTGATTTATGGAGAAGAGCTTTCAAGGATGCATGTGAAAGGTTTTGTCCCCTTCGAGCTGGAGGGCATGAATGTGGCTGCTTGCCTGTGATATCTAGAATGGTGATGGAACAATTGGTTAATAGACTCGATGATGCAATGTTCAACGCGATTCTTCGGGAATCAGCTGATGAGATGCCCACTGATCCTATGTCTGACCCCATTAGTGATTCCAAGGTTCTTCCTATTCCAGCTGGAAAATCGGGCTTTAGGGCAGGTGCACAACTAAAGAATGCTGTGAGTGATGGAACTTTTTTTGACTCTCTTGAAGACAACAATGAAAACGATCACCCTAAATATGAATCATCCTTCAAACCTTTCAATCTGCTTAATGCTTTGAGTGATCTAATGATGCTTCCTTCTGAAATGCTTGCGGACGAGTCTACGAGAAAAGAGGTCTGTCCTAGACTTGGCATATCATTGATAAAACAGGTTGTCAACAATTTTGTTCCCGATGAGTTCTCCCCAGGGCCTATCCCAAATGCTGTTCTTGAGGCCCTCAACAATGAGGATGATGAAGGGTCCATCACAAGCTTTCCATGCACCGCTGATTCCACATTCTATGCACCACCTCCGGCTTCTTCAGTTAGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01619	41683	48767	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001619s00026430.1	PF10358.4	NT-C2	16	87	6.10E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.775
SRR1783600	control	1.804
SRR1783602	moderate drought stress	1.465
SRR1811619	moderate drought stress	1.817

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.066
DRR006520	Root Summer glycyrrhizin high producing strain	2.325
DRR006521	Root Winter glycyrrhizin high producing strain	1.357
DRR006522	Root Winter glycyrrhizin high producing strain	1.643
DRR006523	Root Summer glycyrrhizin low producing strain	2.443
DRR006524	Root Summer glycyrrhizin low producing strain	2.457
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.436
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.493

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.943
SRR2868004	Drought Stress (root)	1.740
SRR2967015	Control (root)	1.059

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.319
SRR9715740	Leaf	0.402
SRR9715741	Leaf	0.784
SRR9715739	Root	0.048
SRR9715742	Root	0.123
SRR9715743	Root	0.199

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.529
SRR8749028	MeJA induced 9h	0.360
SRR8749029	MeJA induced 9h	0.587
SRR8749030	Uninduced	0.659
SRR8749031	Uninduced	0.252
SRR8749032	Uninduced	0.514

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.153
SRR8400027	Control - Root	0.857