Gene detail information of Glyur001618s00028953.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G07050.1 | 0 | cycloartenol synthase 1 |
| NR | KHN32928.1 | 0 | Cycloartenol synthase [Glycine soja] |
| COG | YP_004346025.1 | 1.00E-168 | squalene/oxidosqualene cyclase [Fluviicola taffensis DSM 16823] |
| Swissprot | tr|Q2XPU6|CAS1_RICCO | 0 | Cycloartenol synthase |
| trEMBL | tr|I1J4A4|I1J4A4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G00450.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01618 | 37830 | 44462 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01853 | CAS1 | EC:5.4.99.8 | Steroid biosynthesis | map00100 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001618s00028953.1 | PF00432.16 | Prenyltrans | 158 | 200 | 4.10E-09 |
| Glyur001618s00028953.1 | PF00432.16 | Prenyltrans | 621 | 670 | 7.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.081 |
| SRR1783600 | control | 0.068 |
| SRR1783602 | moderate drought stress | 0.041 |
| SRR1811619 | moderate drought stress | 0.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.050 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.040 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.762 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.896 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 70.434 |
| SRR2868004 | Drought Stress (root) | 74.030 |
| SRR2967015 | Control (root) | 34.939 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.024 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.022 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.057 |
| SRR8749031 | Uninduced | 0.032 |
| SRR8749032 | Uninduced | 0.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.183 |
| SRR8400027 | Control - Root | 2.645 |