Gene detail

Gene detail information of Glyur001618s00028952

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G07050.1	cycloartenol synthase 1
NR	Q9SXV6.1	RecName: Full=Cycloartenol synthase [Glycyrrhiza glabra]
COG	YP_004346025.1	squalene/oxidosqualene cyclase [Fluviicola taffensis DSM 16823]
Swissprot	tr\|Q9SXV6\|CAS1_GLYGL	Cycloartenol synthase
trEMBL	tr\|Q2WGL6\|Q2WGL6_LOTJA	Cycloartenol synthase {ECO:0000313\|EMBL:BAE53431.1}

Sequence

Transcript Sequence

>Glyur001618s00028952.1
CACACACACATTCCGTAACGTGTTTTGGCTGTTTGGCCCAGCCAGCCAGCCATTAGTCCTCAGTCATCATTTGGCTTTGCGAGCTCCGTCCCCTCCGTTCGCAGTAGCTGAGCTGTTGTTGAAAATTAAATGTAATTAAATGCAATGCTCGAATTCAACAATTTCATTTTCCATTCCAGAACCTACACNCTATCTTCTAGTACTACTCCTCCAAAGCAATAACCATCCTTCATTCCCATTTCTCCACTCTTTCTCTTTGATTGGTCAGTCAGGCCTCTTGCAAATCACAGTAGTATATCACACAGACTCACACAGAGGAAAATGTGGAAGCTCAAGATTGCGGAGGGAGGGAGTCCATGGCTTCGGACAGTGAACAATCACGTTGGAAGACAGGTGTGGGAGTTCGATCCTAAGCTTGGATCGCCAGAAGATCTCCTCGAGATTGAAAAGGCTCGCCAGAATTTCCACGACAACCGCTTCACTCACAAACACAGCGCTGATCTACTCATGCGCATTCACTTTGCAAAAGAGAACCCAATGAACGAAGTCCTACCCAAAGTCAGAGTCAAAGATATTGAAGATGTAACTGAAGAGACCGTGAAAACTACATTAAGAAGGGCCATAAATTTCCATTCAACTCTCCAGAGTCATGATGGACACTGGCCAGGAGATTATGGAGGTCCCATGTTTCTTATGCCTGGCTTGGTAATTACTCTGTCTATNACCGGGGCTCTGAATGCAGTCTTAACAGAAGAGCATAGAAAGGAAATATGCCGTTACCTCTATAACCATCAGAACAAGGATGGTGGGTGGGGTTTACATATTGAAGGTCCAAGCACCATGTTTGGCTCTGTCTTGAATTATGTTGCTCTGAGATTGCTTGGCGAGGGACCTAATGATGGACAAGGGGAAATGGAGAAGGGACGTGACTGGATTCTTNGGCATGGCGGTGCTACTTTTATAACATCGTGGGGAAAGATGTGGCTTTCAGTACTTGGAGTGTATGAATGGTCTGGAAATAATCCCCTGCCTCCTGAGATATGGCTCCTTCCATACGTTCTTCCAATTCATCCAGGAAGGATGTGGTGTCACTGCCGGATGGTCTATTTGCCAATGTCCTACTTATATGGAAAGAGGTTTGTTGGCCCAATCACACCAACAATATTATCTTTGAGAAAGGAGCTTTATACCATACCATATCATGATATAGACTGGAATCAGGCTCGCAATTTGTGTGCAAAGGAAGACTTNTACTATCCTCACCCACTTGTGCAAGATATTCTGTGGGCATCTCTACACAAGTTCTTGGAGCCTATTTTGATGCATTGGCCTGGCAAAAAGTTGAGAGAAATGGCTATTAAGACTGCAATCGAGCATATACATTATGAAGATGATAATACTCGTTATCTTTGCATAGGTCCTGTAAATAAGGTGTTAAATATGCTTTGCTGTTGGGTGGAGGATCCAAATTCAGANGCCTTCAAGTTGCATCTTCCAAGGATCTATGATTATCTATGGATTGCTGAAGATGGCATGAAAATGCAGGGCTACAATGGAAGTCAACTATGGGATACTGCATTTACTGCNCAAGCAATTATTTCATCTAACCTCATCGAAGAATATGGTCCAACTCTAAGAAAAGCTCATACATACATTAAGAATTCGCAGGTTTTAGAAGATTGTCCAGGTGATCTTAGNAAATGGTATCGTCACATTTCAAAAGGTGCTTGGCCTTTTTCGACTGCAGATCATGGATGGCCAATTTCTGACTGCACAGCTGAAGGACTGAAAGCTGTTCTATTGCTNTCTAAAATTGCACCAGAGATTGTTGGTGAGCCATTGGATGCAAAGCGATTATATGATGCTGTAAATGTCATTCTCTCATTACAGAATGAAGATGGTGGCTTTGCAACATATGAGCTCACAAGATCTTATACCTGGTTGGAGTTAATCAATCCGGCTGAGACTTTTGGTGACATCGTTATTGATTACCCTTATGTGGAATGTACCTCAGCGGCAATTCAAGCTTTGACATCATTTAAGAANCTATATCCTGGGCATCGTCGAGAAGAAATACAATGCTGTATTGAAAAAGCTGCTTCCTTTATTGAAAAAACACAAGCTTCAGATGGTTCATGGTATGGTTCTTGGGGAGTTTGCTTCACTTATGGCACTTGGTTTGGGGTAAAAGGGCTGATTGCTGCTGGAAAGAGTTTCAATAATTGCTCAAGCATCCGTAAAGCTTGTGAATTTCTGCTGTCTAAGCAGCTCNCATCTGGTGGCTGGGGAGAGAGCTATCTGTCATGTCAAAACAAGGTCAAGTTTGCTGTTTCTNATGTGTATTCAAATGTGGAAAGCAACCGGTCTCATGTAGTAAATACTGGGTGGGCTATGCTGGCTCTCATTGATGCTGAACAGGCTAAGAGAGATCCAACGCCACTGCACCGTGCAGCTGTATACTTGATAAATTCCCAAATGGAGAATGGTGACTTTCCGCAACAGGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACATACGCTGCATACAGAAATGTATTCCCCATATGGGCGTTGGGAGAATACCGTCATCGCGTATTGCAGTTGCAGTAATCCCGCTTTAGTTAGGATGCCATAATTACTTCGGCTATTTATCTTTTTCCATGGTTNTCATCTTTAAAAAGTTTATGGTTAATGAGTTTGGTAGTCCGCTAAACAGAAAGCAAACTCGTGTGGAGAATGTCTATNTGCTTTTTCTAATGCTCATTAGCGCCTCTCTTGCTTCCCCTGCGGCTGCGGCGGAGGAACTAGATTTATAGAGGAAAAAATGTTTGTGTCGCCCTTCCTTTTAGCACAAGGAGCACAGTTATGTGTGTTTTAATTATGTAAATTTCAAAAACTTACCCATCATCTCTCTACCCCCAATTATCTCCTTCATTCTATATCCCTTTTGCAGTTTTGCGCCTACCTCTGCCTTCACTCTTATTGAGTATCCTTTTGGCTATCACACTTGCATTACTATTACTAAATACTAGGAGTAAATGTTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01618	18890	26771	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01853	CAS1	EC:5.4.99.8	Steroid biosynthesis	map00100

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0016866 intramolecular transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001618s00028952.1	PF00432.16	Prenyltrans	146	188	1.30E-12
Glyur001618s00028952.1	PF00432.16	Prenyltrans	588	629	1.60E-10
Glyur001618s00028952.1	PF00432.16	Prenyltrans	638	695	2.80E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.705
SRR1783600	control	20.728
SRR1783602	moderate drought stress	22.584
SRR1811619	moderate drought stress	22.367

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.424
DRR006520	Root Summer glycyrrhizin high producing strain	13.391
DRR006521	Root Winter glycyrrhizin high producing strain	12.826
DRR006522	Root Winter glycyrrhizin high producing strain	12.492
DRR006523	Root Summer glycyrrhizin low producing strain	12.188
DRR006524	Root Summer glycyrrhizin low producing strain	12.400
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.505
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.473

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.598
SRR2868004	Drought Stress (root)	23.502
SRR2967015	Control (root)	26.082

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.136
SRR9715740	Leaf	12.539
SRR9715741	Leaf	11.387
SRR9715739	Root	7.593
SRR9715742	Root	15.879
SRR9715743	Root	14.182

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.360
SRR8749028	MeJA induced 9h	30.727
SRR8749029	MeJA induced 9h	33.595
SRR8749030	Uninduced	10.608
SRR8749031	Uninduced	6.719
SRR8749032	Uninduced	11.739

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.217
SRR8400027	Control - Root	36.335