Gene detail

Gene detail information of Glyur001618s00028951

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G07170.1	1.00E-171	ARM repeat superfamily protein
NR	KHN32930.1	0	Microtubule-associated protein TORTIFOLIA1 [Glycine soja]
Swissprot	tr\|Q9T041\|MAPT_ARATH	5.00E-59	Microtubule-associated protein TORTIFOLIA1
trEMBL	tr\|A0A072UCW5\|A0A072UCW5_MEDTR	0	Microtubule-associated TORTIFOLIA-like protein {ECO:0000313\|EMBL:KEH27286.1}

Sequence

Transcript Sequence

>Glyur001618s00028951.1
ATGAAGAAGATGAAGGGGGGGCAAGGCGGAGGGAAAGGGAGTTTGTTGGAGCTAAAGCAGAGAGTAGCATCGGCGCTGAACAAGGTNGGGGATAGGGACACGCAGCAAATAGGGATGGAAGAGCTGGAGAGGACACTGCAGGGTTTAACCCCCGAAGGGATACCCCCATTCGTGTCGTGCATACTGGACACAGACTCAGAGCAGAAGAGCGCCATCAGAAAGGAGTGCATCAGGCTGATGGCCACACTCGCCACCAGGCTCCACCACTCTCTCATCCTTCCNCACCTCCCCAAGATGGTCGCCAGCATTGTCAAGCGCCTCAGGGATCCCGACTCCCTCGTCAGGGATGCCTGCGTCCACACCCTCGCCCTCCTCGCCTCCAACCTCGTCACCCATTCTAATCAGAAGGTGTTTCTGGTACTTGTCAGGCCCATTTTCGAGGCCCTCGGGGAACAAAATAAGCACGTTCAGTCCGGTTCTGCTTCTTGCCTTGCCAGCATNATTGACAACACACCCCATCCCCCACTTCCCCTTTTGCACAAGATGTTGACCAGGACTCTCAAGTTGCTTAAAAACCCTCACTTCATGGCCAAACCAGCCCTCGTTGACTTGAACAGGAGCATTATCCAGGCTGGGGGCGCTCCAACACAGAATGTNGTGTCCACTGCTATTGCTACCATCCAAGTTGCCCTGAAAGATACCGACTGGACAACACGCAAAGCGGCTTCTGTTGCATTGGGAGAAATCGCTCTGGGCGGTGCTTCTTACTTGCCATCTTTGAGGGCTTCTTGTATCCATTCTCTTGAGTCCTGTCGATTTGACAAGGTCAAACCGGTTAGGGATGCTGTTTTGCAAGCGCTCAAATATTGGAGAAGTCTTCCCGGACCCAACACTCCCGAGCCTTCTGAGACTGGATCTTCCTTCAAAGAAAATATCTGCGGACGCGACTCTGCTGATCTTAGCAGTACTACTGAATCCAGACAGAGGGATGTCAAGCTCCAAAAAGTTAATATGAAATCAACTTCGGGTAGGATTCCCTTGTCTGTTAGAAAAGCATGTCAAAATGATGTTGGACATCATCACCATCTCAAAACAGATGATTGGCATGTTGAAATTGCAGTCCCCAGAACCCATTCTGTAGCGGAATTCCATAACGAAGAATCTGAGAGTAGTTCTGTCACTAAGCCATTAGAGACAATGAGCGCTGATGTTACTAGCATGCAGGAAGTTTGTTATGAATATGTGCCCATGGATGATAAGCAGGAGTGCTCTTCTGTTTCTAATCTTGCCACCGATAACTACGAGACCAAGTTTTTAACTGCTCATGACTGCTTTATAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGGATTACAGAAGCCAATTGCGAGAAGCCAACAGTTTGGTGAAGAAATAAGTTGTATTGATGAACAAATGTACTCCATGAAGATGAAGATGAAGATGCAGCATCGTAGAAGTTCTGATTCTACAGTCACTGAGCCAAGTCCCCAAACTACACATGAATGTTGTGCACAAATGGCAACTGAAATGATTTGTATTCAGAATCAACTTTCAGATATTGAAATCAAACAGGCAAACATGATGCATCAATTACAGATGTTTATGACTGGCACAATGGATGCCCTTTCTACAATTCAATCAAGAATGGGAGGCTTAGAGAATGTACTTGATAGATTAACTCAAGAATCTTTGCAAGGAGGAAGACATTCTTGTTCAGAAAACTCCAAATTAGTGAGGCAGAGCCAAAATGTGGCTTCTCCCAGGTTCTCCATATGCACTCCAAAGCCATCTGCTGAAACTAGTAATAAGCAATCCGGTTTGTTTTCGGCTAAAAATTCTGAAAGTTGGGAAAAAAGAACGTTTTCAAGGAGCCAATCAAGGATTCATTCTGGAGATAGTGCAGATATGTGGAAAACTTACAAGGTAAAGATTGCCAAAAAAATTACAGAGAAGGATATTTTAAACAGCTCAGGGGAGGATNCACAGAGCACAGGTTCTGCTAAAGTGAGAAAGAATGATGGTAAATTTTTTTCCTCTGCTGCCAAAACCAATGCCAGAAGTGGTTGTTCTGAGAGTAATACAGACTACTGGAAATGTGTGAAACGTCTTGTATGTGAAGGGGATCTAAACTCTGCATATATGGAAGCTTTATGTTCCAGTGATGAGCTTATTCTCGTTGAGCTTCTGAATAAAACTGGTCCTGTTATAGAAAGTTTATCGGTGAAGACTGTCAATGTTGTTGAAATAAGTGCTGTCCATGGACCAAATTGCATTGCTCTTTCTATTGAAGCCAAGGAACAGCTTTTGTCGACAATCGAAGAGGTTGTGGACCTGAATATTTTCAGCCACGCGGAACGGAGGTGTGCCGCTGAATTAGGAAGGAAATTACGTCACATGTGGGGTAAGATTACTGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01618	13670	17557	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.351
SRR1783600	control	2.202
SRR1783602	moderate drought stress	1.655
SRR1811619	moderate drought stress	1.601

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.004
DRR006520	Root Summer glycyrrhizin high producing strain	2.927
DRR006521	Root Winter glycyrrhizin high producing strain	0.316
DRR006522	Root Winter glycyrrhizin high producing strain	0.419
DRR006523	Root Summer glycyrrhizin low producing strain	0.942
DRR006524	Root Summer glycyrrhizin low producing strain	1.054
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.600
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.624

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.653
SRR2868004	Drought Stress (root)	6.490
SRR2967015	Control (root)	8.888

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.316
SRR9715740	Leaf	0.649
SRR9715741	Leaf	0.660
SRR9715739	Root	0.374
SRR9715742	Root	0.952
SRR9715743	Root	0.692

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.149
SRR8749028	MeJA induced 9h	7.589
SRR8749029	MeJA induced 9h	7.774
SRR8749030	Uninduced	0.801
SRR8749031	Uninduced	0.352
SRR8749032	Uninduced	0.759

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.538
SRR8400027	Control - Root	6.633