Gene detail

Gene detail information of Glyur001616s00042418

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G11180.1	4.00E-126	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003638585.1	0	Leucoanthocyanidin dioxygenase [Medicago truncatula]
COG	YP_004303697.1	4.00E-24	2OG-Fe(II) oxygenase [Polymorphum gilvum SL003B-26A1]
Swissprot	tr\|P51091\|LDOX_MALDO	3.00E-69	Leucoanthocyanidin dioxygenase
trEMBL	tr\|G8A2N5\|G8A2N5_MEDTR	0	Leucoanthocyanidin dioxygenase {ECO:0000313\|EMBL:AES85723.1}

Sequence

Transcript Sequence

>Glyur001616s00042418.1
ATGATGACTAGTGAAGGATGGCCAGAGCCAATGATTCGAGTCCAAGCTTTAGCCGAAAGTGGCATAAACTCAATCCCCGAACGTTTCATCAAGCCTAAATCCCAAAGACCCACCACTATTGCTCCAACAATAACCCAAGTCATTGATCATGATGGTGAAAATAACAAGAAGGACATGNTCAATATCCCAGTCATTGATTTGCAACACTTGTATGGTGATGACATGAAGCTNCGTGAGGAGACACTCCGTCGGGTTTCCGAGGCGTGTAGGGAGTGGGGTTTCTTCCAAGTGCTGAACCATGGTGTTAGCCATGAGTTGATGAGGAGTGCNAGGGAAGGGTGGCGTGAGTTCTTTCAACAACCACTTGAGGTTAAAGAGAAGTATGCTAACTCCCCAGTTACCTATGAAGGGTATGGGAGTCGTTTGGGGGTGAAAAAGGGTGCCATTTTGGATTGGAGTGACTACTTTTTTCTCCATTATATGCCTTGTTCACTTAGGAACCAAGACAAATGGCCTTCCCTTCCAACTTCTTTAAGGAATGTGATTGCTGAATATGGTGAGGAAGTTGTTAAGCTAGGAGGAAGGGTACTTGAGTTAATGTCAATAAACCTTGGCCAGAGAGAGGATTTCCTTCTAAACGCATTTGGTGGGGAAAATGACCTTGGTGCTTGCTTAAGGGTGAATTTCTATCCAAAGTGCCCACAACCTGATCTCACTCTTGGCCTCTCCCCTCACTCAGACCCTGGTGGTTTGACCATTCTTCTTCCTGATGATTTTGTATCTGGACTTCAAGTACGCAAAGGAGAAGATTGGATCACAGTGCTGAGCAATGCAATATACAAGAGCATAGAACACAGGGTGATTGTGAACTCAAATAAAGATAGAGTTTCATTGGCCTTCTTTTATAACCCCAGGAGTGATTTACTGATTCAACCTGCTAAGGAGCTTGTCACTAAGGATAGGCCAGCACTCTACCCACCAAAGACATATGATGAATACAGACTTTACATTAGGACAAAAGGACCTTGTGGAAAAGCTCAAGTAGACTCTATGAATTCCCACCAAATGTGATTCCCATTTGTGTCATAAATTTGCCCAATTAATGCACACTTGATTTGCATCTAAATAATTGATCATCTTTTGGGAGTGTTATTTATTAGACCCAATATATATTTTTCCTCTACCATTGAAGAATTTACAACTATTGGATGGTTAATTAATGCCCTTCCTTTTTTGGTGTAATTGTTGGTTATAAAAGGAAAAAGTTTGGTTCACACATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01616	59546	63962	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001616s00042418.1	PF14226.1	DIOX_N	62	173	3.00E-30
Glyur001616s00042418.1	PF03171.15	2OG-FeII_Oxy	224	304	4.90E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.069
SRR1783600	control	0.057
SRR1783602	moderate drought stress	0.157
SRR1811619	moderate drought stress	0.222

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.503
DRR006522	Root Winter glycyrrhizin high producing strain	0.550
DRR006523	Root Summer glycyrrhizin low producing strain	0.043
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.551
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.459

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.184
SRR2868004	Drought Stress (root)	0.963
SRR2967015	Control (root)	1.400

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	70.251
SRR9715740	Leaf	48.501
SRR9715741	Leaf	67.436
SRR9715739	Root	0.232
SRR9715742	Root	8.330
SRR9715743	Root	7.899

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.012
SRR8749028	MeJA induced 9h	0.389
SRR8749029	MeJA induced 9h	0.039
SRR8749030	Uninduced	151.729
SRR8749031	Uninduced	39.136
SRR8749032	Uninduced	60.419

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	35.349
SRR8400027	Control - Root	0.260