Gene detail

Gene detail information of Glyur001615s00039982

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38600.1	5.00E-77	HAD superfamily, subfamily IIIB acid phosphatase
NR	XP_006599745.1	1.80E-132	PREDICTED: acid phosphatase 1-like [Glycine max]
COG	YP_005845138.1	5.00E-25	Class B acid phosphatase [Ignavibacterium album JCM 16511]
Swissprot	tr\|P27061\|PPA1_SOLLC	7.00E-61	Acid phosphatase 1 (Precursor)
trEMBL	tr\|K7MJ35\|K7MJ35_SOYBN	7.00E-133	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G34720.2}

Sequence

Transcript Sequence

>Glyur001615s00039982.1
ATCAGTGGAAAAAGCATCAACCNACTTTCTACCTTTTTATTATTCTCGTGTATGACCACGAGCGAGCGAAAAGCCTAATTATGCCAACCAACTCAACTCACACACACGCATTTTCCANCTACTTGATATTCTTCTGCTGCTGCGCCTCTGACTCCTTAATTTCCCCAATTTTGTTCCCCGGCCCCTTCCATATTCGATCTCATCATCAGTAATCCACTTAATCAATTACCCCCTCCACCACTTAATTATACTCTCTCTATATATTATTATTATTATTATTATTATTATAATATATATGCGGCAAATTAGATGATGTTAAAGATAACGATGGTGCAACAAGTCGTGGCGGGATTAACCTTTTTGTTGGCCTTATTGGCGAAGGCACTCGTAGTGTTGAGGAGGCAGAACAAGCAAATTAGGCCTCTGCAGCCTCAGCCGAGTCACAACTACAAGCAGATCGAGATGATTGATGAGGAGTCGTCGTCGCCGTCGCAGTCGCAGTTGTCGGAGGTNGATGATGATGAGAGGTACGGGCTGAGCTGGAGGCTGGCGGTGGAGACAAACAAAGTGGGTAAATGGCGGACGGTCCCACTGCGGTGCTACAACCACGTTCACAACTACATGACCGGTGGGCAGTACGAGCAAGACCTCACCCTCATCATCCACCAAATCTCCTCATATGCTTCTNAGATCCCTCTTTCTGGTGATGGCTTTGATGCCTGGATTCTCGACGTCGATGACACCTGCATCTCTAACGTTTCCTATTACGAGGCTAACCGATTTGGGTGCGACCCATTTGATTCAACGATATTCAAGGCATGGATCATGAAGGGAATGTGCCCGGCAAATCCCGTGGTACTAGGATTGTTTAAAACGTTGACGGAGAGAGGTTTCAAGGTGTTCTTGCTAACGGGAAGAGACGAAGCAACACTCGGCAAAATCACCACGGACAACTTGCGTAACCAAGGATTCATCGGCTATGAACNCCTTATTTTGAGGAGTGCGCAATACAAAGGACAAAGTGCTGTGAGATACAAGTCAGCGATTAGGAAGGAGATAGAAGAACAAGGGTATAGGATATGGGGAAATGTGGGAGACCAGTGGAGTGATCTTCAAGGAGAGTGTTTGGGCAATCGTACTTTCAAGCTCCCCAATCCCATGTATCACATTTCTTGAACTAGTTTGAAGTTACCATGATCCATCCATTTACCTAGCTAGCTAATTCATTCTACTTCTTCCTTCTAATCCATATGCCTTGCTGCAATGGATAGCGAAAGAGGCTAGCTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01615	18503	24057	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003993 acid phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001615s00039982.1	PF03767.9	Acid_phosphat_B	72	287	3.70E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.565
SRR1783600	control	4.580
SRR1783602	moderate drought stress	2.078
SRR1811619	moderate drought stress	2.109

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.509
DRR006520	Root Summer glycyrrhizin high producing strain	17.108
DRR006521	Root Winter glycyrrhizin high producing strain	3.718
DRR006522	Root Winter glycyrrhizin high producing strain	3.542
DRR006523	Root Summer glycyrrhizin low producing strain	34.044
DRR006524	Root Summer glycyrrhizin low producing strain	33.901
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.951
DRR006526	Leaf Summer glycyrrhizin high producing strain	40.841

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.712
SRR2868004	Drought Stress (root)	51.111
SRR2967015	Control (root)	55.322

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	72.152
SRR9715740	Leaf	32.484
SRR9715741	Leaf	65.012
SRR9715739	Root	20.965
SRR9715742	Root	25.796
SRR9715743	Root	26.951

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	38.768
SRR8749028	MeJA induced 9h	37.373
SRR8749029	MeJA induced 9h	56.373
SRR8749030	Uninduced	75.339
SRR8749031	Uninduced	76.006
SRR8749032	Uninduced	62.527

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.537
SRR8400027	Control - Root	34.104