Gene detail information of Glyur001612s00041559 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27310.1 | 1.00E-22 | B-box type zinc finger family protein |
| NR | XP_003527285.1 | 1.87E-46 | PREDICTED: myb-like protein AA-like [Glycine max] |
| Swissprot | tr|Q9LJB7|BBX32_ARATH | 2.00E-11 | B-box zinc finger protein 32 {ECO:0000303|PubMed:19920209} |
| trEMBL | tr|I1KE57|I1KE57_SOYBN | 7.00E-47 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G39810.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01612 | 45072 | 46778 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.767 |
| SRR1783600 | control | 1.695 |
| SRR1783602 | moderate drought stress | 1.596 |
| SRR1811619 | moderate drought stress | 1.556 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.921 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.894 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.411 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.325 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.692 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.823 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.471 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.445 |
| SRR2868004 | Drought Stress (root) | 8.674 |
| SRR2967015 | Control (root) | 11.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 34.940 |
| SRR9715740 | Leaf | 58.361 |
| SRR9715741 | Leaf | 46.558 |
| SRR9715739 | Root | 8.185 |
| SRR9715742 | Root | 12.377 |
| SRR9715743 | Root | 14.037 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.424 |
| SRR8749028 | MeJA induced 9h | 5.976 |
| SRR8749029 | MeJA induced 9h | 5.550 |
| SRR8749030 | Uninduced | 1.475 |
| SRR8749031 | Uninduced | 0.860 |
| SRR8749032 | Uninduced | 2.195 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.235 |
| SRR8400027 | Control - Root | 7.226 |