Gene detail

Gene detail information of Glyur001611s00032568

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G26910.1	4.00E-113	Ribosomal protein L16p/L10e family protein
NR	XP_004512258.1	2.50E-153	PREDICTED: 60S ribosomal protein L10-like [Cicer arietinum]
COG	NP_613538.1	2.00E-46	50S ribosomal protein L10 [Methanopyrus kandleri AV19]
Swissprot	tr\|Q9SPB3\|RL10_VITRI	1.00E-148	60S ribosomal protein L10
trEMBL	tr\|I3SEG3\|I3SEG3_LOTJA	2.00E-151	Uncharacterized protein {ECO:0000313\|EMBL:AFK38655.1}

Sequence

Transcript Sequence

>Glyur001611s00032568.1
AATAGCGTTAGTTTCAGCACAGCCTCAACCCAAAACGCGTGCAGAGAGAGAGCGCGACGCAGCCATGGGAAGGAGACCTGCAAGGTGTTATCGTCAAATAAAGAACAAGCCATACCCCAAGTCACGGTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGCATGAAGAAGAAAGGCGTTGATGAGTTTCCTTTCTGTGTTCATCTGGATGCATTCCACTTGAGGGTCAGGGTACATCCATTCCATGTTCTTAGGATCAACAAGATGCTTTCATGCGCTGGAGCTGATAGGCTTCAGACTGGCATGAGAGGTGCATTTGGAAAGCCACTGGGTACTTGTGCTAGAGTGGCTATCGGACAGGTCCTTCTTTCAGTTCGCTGCAAGGACAGCAACAGCCATCATGCACAGGAGGCCCTTCGTCGTGCTAAGTTCAAGTTCCCTGGTCGCCAAAAGATCATAGTTAGCAGGAAGTGGGGATTCACCAAGTTTAACCGTACTGATTATCTGAAGTACAAGTCAGAGAACAGGATTGTGCGTGATGGTGTGAATGCAAAGCTTCTTGGGTGCCATGGACCATTGGCTAACCGACCTGCAAGGTGTTATCGGCAAATAAAAAACAAGCCATATCCGAAGTCACGGTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGCATGAAGAAGAAAGGTGTNGATGAGTTTCCTTTCTGTGTTCATCTGGTTAGTTGGGAGAAGGAAAATGTTTCAAGTGAGGCTCTGGAAGCCGCTAGAATTGCTTGCAACAAATATATGGCAAAGTTTGCTGGAAAGGATGCATTCCACTTGAGGGTGAGGGTACATCCATTCCATGTTCTTAGGATCAACAAGATGCTTTCATGCGCCGGAGCTGATAGGCTTCAGACTGGCATGAGAGGTGCATTTGGAAAGCCACTGGGTACTTGTGCTAGAGTGGCTATCGGGCAGGTCCTTCTCTCCGTCCGCTGCAAGGACAGCAACAGCCATCATGCACAGGAGGCCCTTCGTCGTGCCAAGTTCAAGTTCCCCGGTCGGCAAAAGATCATTGTTAGCAGGAAGTGGGGATTCACCAAGTTTAACCGCACTGATTATCTGAAGTACAAGTCAGAGAACAGGATTGTGCGTGATGGTGTGAATGCAAAGCTTCTTGGGTGCCATGGACCATTGGCTAACCGTCAACCTGGGAGAGCTTTTTTGAATGCCAGCGTTAATGCTTAAGCTTGTCTGTTACTTGGAATTTGGAAATATTAGTTTGCATCACATTAGGTTTGCAATAGTGAATTTGAATTTGTTATTTTGTCTTTACATGATACTAAAACCGAGTTGAGTTTGTTTTCCATTTTGCGAACCATCTTGTATGGATGATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01611	23536	33626	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001611s00032568.1	PF00252.13	Ribosomal_L16	56	136	4.80E-17
Glyur001611s00032568.1	PF00252.13	Ribosomal_L16	180	341	9.50E-31
Glyur001611s00032568.2	PF00252.13	Ribosomal_L16	56	136	1.10E-17
Glyur001611s00032568.3	PF00252.13	Ribosomal_L16	5	166	2.00E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	79.843
SRR1783600	control	78.893
SRR1783602	moderate drought stress	58.661
SRR1811619	moderate drought stress	57.823

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	173.405
DRR006520	Root Summer glycyrrhizin high producing strain	174.004
DRR006521	Root Winter glycyrrhizin high producing strain	136.604
DRR006522	Root Winter glycyrrhizin high producing strain	136.516
DRR006523	Root Summer glycyrrhizin low producing strain	114.350
DRR006524	Root Summer glycyrrhizin low producing strain	111.212
DRR006525	Leaf Summer glycyrrhizin high producing strain	72.307
DRR006526	Leaf Summer glycyrrhizin high producing strain	71.106

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	354.010
SRR2868004	Drought Stress (root)	243.759
SRR2967015	Control (root)	235.279

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	206.627
SRR9715740	Leaf	149.473
SRR9715741	Leaf	228.272
SRR9715739	Root	105.388
SRR9715742	Root	192.991
SRR9715743	Root	179.421

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	325.567
SRR8749028	MeJA induced 9h	123.893
SRR8749029	MeJA induced 9h	267.656
SRR8749030	Uninduced	82.479
SRR8749031	Uninduced	80.115
SRR8749032	Uninduced	135.176

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	184.270
SRR8400027	Control - Root	151.325