Gene detail information of Glyur001610s00030571 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G11210.1 | 1.00E-80 | SGNH hydrolase-type esterase superfamily protein |
| NR | XP_006583655.1 | 1.24E-124 | PREDICTED: GDSL esterase/lipase CPRD49-like [Glycine max] |
| Swissprot | tr|Q9SRM5|CPR49_ARATH | 2.00E-100 | GDSL esterase/lipase CPRD49 (Precursor) |
| trEMBL | tr|I1KKE9|I1KKE9_SOYBN | 5.00E-125 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G18200.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01610 | 43716 | 54705 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001610s00030571.1 | PF00657.17 | Lipase_GDSL | 18 | 170 | 6.20E-23 |
| Glyur001610s00030571.2 | PF00657.17 | Lipase_GDSL | 10 | 189 | 4.00E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.377 |
| SRR1783600 | control | 11.121 |
| SRR1783602 | moderate drought stress | 13.354 |
| SRR1811619 | moderate drought stress | 13.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.354 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.344 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.693 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.569 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.916 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.384 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.051 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 69.748 |
| SRR2868004 | Drought Stress (root) | 94.470 |
| SRR2967015 | Control (root) | 64.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 60.603 |
| SRR9715740 | Leaf | 63.925 |
| SRR9715741 | Leaf | 73.060 |
| SRR9715739 | Root | 15.236 |
| SRR9715742 | Root | 20.335 |
| SRR9715743 | Root | 18.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.610 |
| SRR8749028 | MeJA induced 9h | 33.433 |
| SRR8749029 | MeJA induced 9h | 36.772 |
| SRR8749030 | Uninduced | 69.093 |
| SRR8749031 | Uninduced | 111.111 |
| SRR8749032 | Uninduced | 72.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 59.752 |
| SRR8400027 | Control - Root | 69.023 |