Gene detail

Gene detail information of Glyur001610s00030569

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51860.1	9.00E-136	cation exchanger 3
NR	XP_003529150.1	0	PREDICTED: vacuolar cation/proton exchanger 3-like [Glycine max]
COG	YP_007092535.1	2.00E-65	CaCA family calcium/proton antiporter [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q93Z81\|CAX3_ARATH	0	Vacuolar cation/proton exchanger 3
trEMBL	tr\|I1KKE4\|I1KKE4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G18150.6}

Sequence

Transcript Sequence

>Glyur001610s00030569.1
NATATCAATAGCTAGCTAGCTAGCAATATTTGTCCTTTTTGCTTGCTACAAAAAAAACTATAAGCTTAATTAATTAAGGGTATAGCCAAAAAAATGGGTTCTCACCAACAAGAACCATGGCTATTGGAGAATGGGAAACCCAAGGTGTTGACCAAGGAGATGAGGCATGGACATGGACGAAGCCGAACCGCACACAACATGTCCTCCTCCTCTTTGCGCAAGAAATCCGACCACACCCTTGTCTCCAAGGTTCGCTGTGTGTTGCTTAGGAACCTCCTTGTTAACATCCAAGAGGTTATTCTTGGCACCAAGCTCTCCATTCTCTTCCCTGCCATCCCACTTGCCATCATTGCTGAATGCTATGGCTTTGGAAGATCCTGGATTTTTATATTGAGCTTACTTGGACTCACCCCACTNGCTGAACGTGTAAGCTTCCTCACAGAACAAGTTGCCTTTTACACCGGTCCCACAGTTGGAGGACTACTAAATGCGACATGTGGGAATGTTACTGAGCTGATAATAGCNATATTTGCTCTTAGCAGCAANAAAATTGCTGTGGTCAAGTATTCTCTCTTGGGTTCCATCCTTTCAAACCTTCTTCTGGTTCTTGGAACCTCTCTACTTTGTGGTGGCATTGCAAACATTAGAGTGGAGCAAAAATATGACAGAAGACAAGCAGATGTTAACTCACTTATGCTNCTTTTGGCATTGTTATGCCACTTGCTTCCAATGCTATTCAGATACAGTGCTGCCTCAGCTGCTCTCACTGCAGACCCTTCCCTCTACTTGTCAAGAGCTTCTAGCATTGTGATGTTGGTTGCATATTTTGCTTACCTTGTCTTTCAACTCTGGACACACAGGCAACTATTTGAAGCTGAAGATGAGGGTGAAGATGGCAACAATGATTCAGAAGAACAAGCTGTGATTGGATTCTGGAGTGGCTTTGCTTGGCTGGCTGGGATGACTGATGCATCAGATTCATGGGGTCTGTCTGTAAGCTTTCTCAGCATAATCTTGCTACCAATAGTTGGCAATGCAGCTGAGCATGCNGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGACATCTCGTTAGGTGTTGCATTGGGTTCTGCAACTCAAATTGGCATGTTTGTGGTTCCCCTCTGTGTGACTGTTGCTTGGATAATGGGAATCAAAATGGACCTGAACTTCAACCTCCTAGAGACAGGTTCTCTTGCTTTGGCAATTATAGCCACAACCTTCACTTTACAGGATGGTACTTCTCACTACATGAAAGGCCTTATTCTCCTGCTTTGCTACGTTGTTATTGGGGCTTGCTTCTTCGTACAAAGAACACCATCTGATCAACCTGATGTTACTAACATCACCCTTAAATCAGCCACTGGTGCAGTTTTAAATGCCTAGTAGGGTCTGGCCTATTTTGGTCCCTTCNTGAAACGAAGGATGGCAGCATCCAAACTCAAACGCAGATTCATTGCATTGGTTTATTGGTTCATTTCAATCATTTCTGTCACATTCAGAGACAGAAATGGCAGAAGAANAAAAAAAGTTTACTGGTGGTTTTGCAAGTAATATTTATATTGCACAAGCTGTGAATAGGGGNCTCTGCAACTGATTTTGAGTCCAGGATTTTCAGCCATTATATATGCGTGTTCTATCTATCACAGGGTTGTGGCTTGTTGGCATAGGAGTGAAGAAGGGGTTGTTTTTGATCGTGTATTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01610	3115	8089	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0006816 calcium ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0008324 cation transmembrane transporter activity

GO:0015369 calcium:proton antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001610s00030569.1	PF01699.19	Na_Ca_ex	104	250	5.30E-23
Glyur001610s00030569.1	PF01699.19	Na_Ca_ex	289	406	2.90E-17
Glyur001610s00030569.2	PF01699.19	Na_Ca_ex	104	250	5.30E-23
Glyur001610s00030569.2	PF01699.19	Na_Ca_ex	289	406	2.90E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	57.834
SRR1783600	control	57.476
SRR1783602	moderate drought stress	60.589
SRR1811619	moderate drought stress	61.016

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.012
DRR006520	Root Summer glycyrrhizin high producing strain	19.949
DRR006521	Root Winter glycyrrhizin high producing strain	3.561
DRR006522	Root Winter glycyrrhizin high producing strain	3.588
DRR006523	Root Summer glycyrrhizin low producing strain	12.259
DRR006524	Root Summer glycyrrhizin low producing strain	12.196
DRR006525	Leaf Summer glycyrrhizin high producing strain	381.345
DRR006526	Leaf Summer glycyrrhizin high producing strain	379.771

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.114
SRR2868004	Drought Stress (root)	19.012
SRR2967015	Control (root)	15.452

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	758.838
SRR9715740	Leaf	783.985
SRR9715741	Leaf	745.324
SRR9715739	Root	86.666
SRR9715742	Root	121.986
SRR9715743	Root	110.289

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.060
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.267
SRR8749031	Uninduced	0.038
SRR8749032	Uninduced	0.165

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.240
SRR8400027	Control - Root	37.741