Gene detail information of Glyur001609s00042024 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G40390.1 | 4.00E-09 | DNAse I-like superfamily protein |
| NR | XP_007027800.1 | 2.75E-49 | Uncharacterized protein TCM_022640 [Theobroma cacao] |
| trEMBL | tr|A0A061EV65|A0A061EV65_THECC | 1.00E-49 | Uncharacterized protein {ECO:0000313|EMBL:EOY08302.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01609 | 56276 | 57488 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001609s00042024.1 | PF03372.18 | Exo_endo_phos | 32 | 197 | 5.20E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.941 |
| SRR1783600 | control | 4.110 |
| SRR1783602 | moderate drought stress | 7.233 |
| SRR1811619 | moderate drought stress | 7.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.258 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.089 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.130 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.064 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.851 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.958 |
| SRR2868004 | Drought Stress (root) | 10.337 |
| SRR2967015 | Control (root) | 8.549 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.999 |
| SRR9715740 | Leaf | 0.105 |
| SRR9715741 | Leaf | 0.500 |
| SRR9715739 | Root | 2.749 |
| SRR9715742 | Root | 1.945 |
| SRR9715743 | Root | 3.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.330 |
| SRR8749028 | MeJA induced 9h | 2.272 |
| SRR8749029 | MeJA induced 9h | 1.662 |
| SRR8749030 | Uninduced | 1.384 |
| SRR8749031 | Uninduced | 1.055 |
| SRR8749032 | Uninduced | 1.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.523 |
| SRR8400027 | Control - Root | 17.653 |