Gene detail information of Glyur001609s00042023 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G01050.1 | 6.00E-19 | zinc ion binding;nucleic acid binding |
| NR | KHN27519.1 | 3.59E-35 | hypothetical protein glysoja_018631, partial [Glycine soja] |
| trEMBL | tr|M5W8Y7|M5W8Y7_PRUPE | 4.00E-33 | Uncharacterized protein {ECO:0000313|EMBL:EMJ10169.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01609 | 54504 | 56210 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001609s00042023.1 | PF14111.1 | DUF4283 | 98 | 243 | 1.20E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.412 |
| SRR1783600 | control | 3.629 |
| SRR1783602 | moderate drought stress | 3.747 |
| SRR1811619 | moderate drought stress | 3.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.084 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.279 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.819 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.984 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.476 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.445 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.245 |
| SRR2868004 | Drought Stress (root) | 1.408 |
| SRR2967015 | Control (root) | 2.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.464 |
| SRR9715740 | Leaf | 0.064 |
| SRR9715741 | Leaf | 0.132 |
| SRR9715739 | Root | 0.812 |
| SRR9715742 | Root | 1.052 |
| SRR9715743 | Root | 0.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.962 |
| SRR8749028 | MeJA induced 9h | 0.561 |
| SRR8749029 | MeJA induced 9h | 0.377 |
| SRR8749030 | Uninduced | 0.371 |
| SRR8749031 | Uninduced | 0.239 |
| SRR8749032 | Uninduced | 0.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.312 |
| SRR8400027 | Control - Root | 5.107 |