Gene detail

Gene detail information of Glyur001607s00029755

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25730.1	0	FtsJ-like methyltransferase family protein
NR	XP_003607491.1	0	AdoMet-dependent rRNA methyltransferase spb1 [Medicago truncatula]
COG	NP_248379.1	8.00E-33	cell division protein FtsJ [Methanocaldococcus jannaschii DSM 2661]
trEMBL	tr\|G7JTV9\|G7JTV9_MEDTR	0	Putative rRNA methyltransferase {ECO:0000256\|HAMAP-Rule:MF_03163}

Sequence

Transcript Sequence

>Glyur001607s00029755.1
ATGGGGAAGGCGAAGGCGAAGGGGAAGCATCGTTTGGACAAGTACTACCACTTGGCGAAAGAGCACGGTTACAGATCCAGAGCCTCATGGAAGCTGGTCCAGCTCAACTCCAAGTTCCGTTTCCTGGAATCTGCACGNTCCGTCCTCGACCTCTGCGCCGCCCCCGGAGGTTGGATGCAGGTCGCCGTCCAGCGAGTACCGGTGGACCACCTCGTCATCGGCGTCGACCTCGCCCCCATCGCCCCCATCCGNGGCGCCATCGCCATCCAGGAGGACATCACTAGGCCCGAGTGCAAGTCACGAATTAAGAAGCTCATGAACGAGCACGGTTACCGCGCCTTCGATGTCATCCTCCATGACGGTTCCCCTAACGTCGGTGGTGCTTGGGCTCAGGAAGCCATGAGCCAGAANGCCCTCATTTTCAGGTCNCAGGATTACAGTTCCGTAGTGTATTGTTTGAAGCAGTTGTTTGAGAAGGTTGAGGTGGATAAACCGGCGGCTAGTAGGTCTGAATCTGCTGAGATATATGTTTTGGGGCTTAGGTACAAGGCCCCTGCCAAGGTTGATCCGCGCCTTCTCGATGTCAAGCATCTCTTTCAGGCATCTGCACAACCGCAGGCTAAGGTGGTGGATGTACTTAGAGAAAATAAGCAAAAGAGGCATCGTGATGGCTACGAAGATGGAAACACAACTTTAAGGAAGGTGTCTTCAGCTGCAAATTTTATTTGGTCAAATGCTCCTCTGGAGATCCTTGGTTCAGTCACTTCTATAACCTTTTCTGATCCAGCTGATTTACCAATCAAGGATCATGACTTAACAACTGAAGAGGTAAAATCTCTCTGTGATGATTTGAGGGTTTTGGGGAAGCAAGACTTCAAGCATCTTTTAAAGTGGCGGATTCACATTAGAAAATCTCTTTTACCTGCTCAAAAGCCTGATCCTACTACTACAGCAGAGACGGAAAATGAGCACACAGTGGATGAAGATGATAGACTGCTCAATGAAATGGAGGAACTGACATCTGCAATGGACCGCAAGAAGAAACGTGCAAAAAAGCTTATTGCAAAAAGAAGAGCAAAGGACAAGGCACGAAAAGCAACAGGGATGCAAATGGATGCAGTAGAAGATGGTTATGTTGATCATGAGCTGTTTTCACTTTCCTCTATCAAGGGTAAGAAGGATCTGGTAGCTGTTGACACCACTGAATATGAAGGTGATGAGGGTGAAGTCGATGACAGTGAGAATGAAGAAATCAATGAAGGCTCAGACCATTCATCCAGTGACCTGGATTCTGATGATGAACGTAAAAGATACAACGAACAAATGGAAGAGTTACTTGATCAAGCTTATGAGCGGTTCGTGATCAAAAAGGAAGGAAGTTCAAAGCAGCGGAAGCGTGTTAAGAAATCTTATGATGCAGAGTCCCAACTTTTGGAGGCTGGTGAGGACGAGGACATTGTTCAGTCCAGATATGATTCAGATGAAGATCAGGTTGATCAAGAGGCAAATCCTTTGATGGTGCCACTTAATGATGGGGCAGAGCCCACCCAAGAGGAGATCACAAATAAGTGGTTTAGTCAGGATATCTTTGCTGAAGCTGTAGAGGAAGGAGACTTTGTGAAGCACGAGAGTGAAGATGAAATGGATATTGATGGGCTGAAGGAGAAGACTTCTGTTGCAAAAAAGGTCANAGAAAATAAAACAGTTGCTTCTGCAGAGATAGATCGCACACAATCTCAAGCATCTAAGGCCGAGGATTTTGAGATCGTTCCTGCACCTGCTACTGATTCAAGTGATGATTCATCTTCTGATGAATCGGAAGAGGAAGATGTTGAAACCAAAGCTGAGATATTGGCTTATGCTAAGAAGATGTTGAGGAAAAAACAACGGGAGCAGATGCTCGATGATGCATATAACAAGTACATGTTTGATGATGAGGGATTGCCCAAGTGGTTTCTAGATGAGGAAANGAGACACCGCCAACCAATAAAGCCAATCACCAAAGAAGAAATTGCTGCAATGAGAGCACAGTTTAAAGAAATTGATGCTCGGCCAGCAAAGAAGGTGGCAGAGGCCAAAGCACGAAAGAAGCGTGTTGCAATGAGGAAGCTTGAGAAAGTGCGTAAGAAGGCCAATGCTATATCGGATCAGCCAGACATATCTGATCGTTCAAAGAGCAAGCAAATTGATCAACTATATAAAAAGGCTGTTCCAAAGAGGCCTAAAAAGGAATATGTTGTTGCAAAGAAAGGTGTCCAAGTTAAGGGTGGCAAGGGAAAAGTCGTCGTTGATCGCAGAATGAAGAAGGATGCTAGGCAACGTGGAATGAGTAAGGCAGGAAAAAGAGGTTCTAAGGGGAAGGGTAAGGCTCCGAAGGGCAAAGGATCTTCAAAGGCCTCTGCGAAGAAGGGAAGAAAGGGCAATACATGAAAATAGGTTGGTGCTCAATTTCTCGTGGGGACATTATCTTCCCGGCTCAATTTTGTCTGCTCATTTTTTTCTCGTTTGTTATTGTTTAATAGATAATATAAATTAAAGAATAGAGCTGTTTTGTTCTTCATAAAGGCAATCCAAATTTGATTAAAGTTGTCTTTAGTAGCAGCTAATTAAGTTATTTGAAATTGATTATGGGCACTACACCAGTATTTGTGAGAATGGCAGGGTCGTTAAGAATCTTCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01607	55450	60825	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0001510 RNA methylation

GO:0006364 rRNA processing

GO:0031167 rRNA methylation

GO:0032259 methylation

cellular_component
GO:0005634 nucleus

molecular_function

GO:0008168 methyltransferase activity

GO:0008649 rRNA methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001607s00029755.1	PF01728.14	FtsJ	24	142	5.40E-32
Glyur001607s00029755.1	PF11861.3	DUF3381	212	365	5.10E-41
Glyur001607s00029755.1	PF07780.7	Spb1_C	580	775	3.20E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.114
SRR1783600	control	26.437
SRR1783602	moderate drought stress	52.583
SRR1811619	moderate drought stress	52.150

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.799
DRR006520	Root Summer glycyrrhizin high producing strain	33.895
DRR006521	Root Winter glycyrrhizin high producing strain	36.723
DRR006522	Root Winter glycyrrhizin high producing strain	35.429
DRR006523	Root Summer glycyrrhizin low producing strain	37.318
DRR006524	Root Summer glycyrrhizin low producing strain	37.344
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.056
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.098

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.217
SRR2868004	Drought Stress (root)	32.987
SRR2967015	Control (root)	39.333

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.961
SRR9715740	Leaf	20.322
SRR9715741	Leaf	14.462
SRR9715739	Root	2.236
SRR9715742	Root	25.119
SRR9715743	Root	25.861

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	109.785
SRR8749028	MeJA induced 9h	66.199
SRR8749029	MeJA induced 9h	78.463
SRR8749030	Uninduced	10.507
SRR8749031	Uninduced	8.258
SRR8749032	Uninduced	12.120

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.103
SRR8400027	Control - Root	31.259