Gene detail

Gene detail information of Glyur001607s00029751

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39210.1	0	Glucose-1-phosphate adenylyltransferase family protein
NR	XP_003541029.1	0	PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1-like [Glycine max]
COG	YP_005068635.1	4.00E-172	glucose-1-phosphate adenylyltransferase [Arthrospira platensis NIES-39]
Swissprot	tr\|Q00081\|GLGL1_SOLTU	0	Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment)
trEMBL	tr\|I1LQ25\|I1LQ25_SOYBN	0	Glucose-1-phosphate adenylyltransferase {ECO:0000256\|RuleBase:RU003565}

Sequence

Transcript Sequence

>Glyur001607s00029751.1
AAATCAACATTATTAACCTATATTTTATGTTCTTAGCTATAGTTTTCGAAAATAGACATATTACAAAGGCCGTGAGATTTTTCCCATCTTTCTCGTGCTCTGGCAGGCTCACAAGCCAATAAAGGCAACAACCACAACCTTCAACACAACCACTACTANATCACATTTCACAGTCTCAGACTTGGGGTGGCATAGAGCATTTATTCTCTTCAACTTTGGTGTTGCTTTTCATATTCCTACTTCATTCCGAGGTTTGCTTAAATTTGAACTTCAAAGTACAAAACTTTTGATNGAGTTTTGGCTCTTTGCAAGGACTTGAACTGTTGATTTCAATTACCATCTGAGGCTACCACAACACAATATGGTGTCTGCTTGTGTGACCTTTAACACCAATACCCATATAGCAAACNCGAGGAAAGACAATGTTTTTCGACAACATAATGGTTTTTTAGGTGAGAGAATCAAAGGGGGTCTGAGTTACAGTCCATGGATNAGTAATCAGTTGGACATAAGTTTGAGAACCCAGGAGAGAGTGAAGAAGGCTAAACCTGGTGTTGTATCTGCTATTCTTACATCAGATAATGCCAAAGAGTCCTTGACCTTTCAGGTGCCATCGTTTCTGAGAAGAAATGCNGACCCCAAAAATGTTGTTTCCATCATATTGGGAGGAGGTCCTGGGTTTCAGCTCTTCCCTCTTACCAAACGAACTGCCACACCTGCTGTCCCTGTTGGTGGATGCTACAGGCTTATAGACATCCCCATGAGCAACTGCATCAACAGTGGAATTAACAAAGTATTTGTGCTGACCCAGTTCAACTCAGCATCCCTGAACCGTCACATCGCTCGCACCTATTTTGGAAATGGCATCAACTTTGGGGATGGATATGTGGAGGTTCTGGCGGCTACTCAAACACCAGGAGAAGCTGGAAAGAGATGGTTCCAAGGAACGGCAGATGCTGTGAGGCAATTTACATGGGTATTTGAGGATGCCAAGCACACAAACATTGAGAATGTATTGATCTTGGCTGGAGATCATCTATACCGAATGGATTACATGGACCTTGTGCAGAGTCACATTGACAGAAATGCAGATATTACAGTGTCATGTGCTGCTGCAGGTGACAGCCGTGCATCAGATTATGGATTGGTCAAGGTAGATGGCAGAGGTCGCATTGTCCAATTTACAGAAAAACCCAAGGGAGCTAATCTGAAAGCCATGCAAGTAGATACCTCTCCTTTCGGATTGTCACCGCAAGATGCATTANGGTCACCATATATTGCNTCTATGGGGGTTTATGTATTCAAGACAGATGTTTTACTCAAGCTTCTGAAATGGAGGTATCCCACAGCCAATGACTTTGGATCTGAAATCATTCCTGCAGCTGTTAGGGAACACAATGTCCAATCGTTCTTTTTCGAAGACTATTGGGAAGACATTGGAACAATAAAATCATTTTATGATGCTAACATGGCTCTTACTGAAGAGAACCCCATGTTCAAATTTTATGATCCTAAGACACCCATTTTCACATCTCCAAGATTCTTACCACCAACAAAGATTGATAAATGCCGGATTATGGATGCAATAATCTCCCATGGCTGTTTCCTGAGAGAATGTACTGTCCAACATTCCATTGTGGGTGAACGTTCACACTATTACCAAACTGAATCCGAAATTGCTTCTCTGCTGGCAGAGGGAAAGGTTCCCATTGGGATTGGAAGGAACACCAAAATCAGGAAGTGTATGATTGACAAGAATGCAAAGATTGGGAAAGATGTGATCATCATGAACAAAGATGGTGTTGAAGAAGCAGATAGACCAGAAGAAGGATTTTACATCCGATCAGGAATCACCATCATAACAGAGAAGGCAACAATAGAAGATGGCACTGTCATATAGATGCCATGTTTTTACTTGCTTCATGGGCTGGTTGTGTCATAAGTAGCTGGAAGAAGCATTCCAAGGAGCACTTTGGTCTTTTGGAACAAAAGGGTANCACTTGTAACAAACACTATGTACAATTGAGAAACATGCACCCCCCCCCCCCCTATATATGCAAAATAGAAGGCTTCCCCCACACTACATGTAAAAATAGAAGGAATAAATCAAGATATGCGCAGAATAAGTAAATAAAATGATGAAAGGCTGTTTGTGAACTGCCAAGCTGTTTTCTCCCTTTGTGTTTCTGGTGTTCTACTACTATTACTGCAATTGGTTGTAATGAAGTTGGCCACTCCCTTCTCATACTTAACATAGCCATAGTCGTATGTATATATAGTTGATTGATTGGCATGCCGGAATTTAAGATCTCAACCATTGAATTAATCCAAGAACTAATCAGAGAATCNGAGCTGGGTGTGGATTGATTGATAAGACTCTACTCTCCAACAAATTCTTGGGATGCCTTTTTTTTTTAAAAAAAATAAAGTATAAAATTTTCTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01607	38141	43690	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00975	glgC	EC:2.7.7.27	Starch and sucrose metabolism	map00500
			Amino sugar and nucleotide sugar metabolism	map00520
			Biofilm formation - Escherichia coli	map02026

Gene Ontology

biological_process

GO:0005978 glycogen biosynthetic process

GO:0009058 biosynthetic process

molecular_function

GO:0008878 glucose-1-phosphate adenylyltransferase activity

GO:0016779 nucleotidyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001607s00029751.1	PF00483.18	NTP_transferase	98	374	1.10E-78

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1873.563
SRR1783600	control	1878.009
SRR1783602	moderate drought stress	2400.075
SRR1811619	moderate drought stress	2386.151

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1147.387
DRR006520	Root Summer glycyrrhizin high producing strain	1133.427
DRR006521	Root Winter glycyrrhizin high producing strain	363.787
DRR006522	Root Winter glycyrrhizin high producing strain	353.721
DRR006523	Root Summer glycyrrhizin low producing strain	408.887
DRR006524	Root Summer glycyrrhizin low producing strain	406.864
DRR006525	Leaf Summer glycyrrhizin high producing strain	144.107
DRR006526	Leaf Summer glycyrrhizin high producing strain	143.512

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	98.565
SRR2868004	Drought Stress (root)	32.478
SRR2967015	Control (root)	19.305

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.822
SRR9715740	Leaf	5.513
SRR9715741	Leaf	20.970
SRR9715739	Root	123.830
SRR9715742	Root	704.377
SRR9715743	Root	585.190

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.019
SRR8749028	MeJA induced 9h	0.881
SRR8749029	MeJA induced 9h	3.131
SRR8749030	Uninduced	0.639
SRR8749031	Uninduced	0.682
SRR8749032	Uninduced	0.899

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	598.891
SRR8400027	Control - Root	767.906