Gene detail information of Glyur001607s00029745 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G34555.1 | 1.00E-33 | Ribosomal protein S25 family protein |
| NR | NP_001236341.1 | 4.64E-71 | uncharacterized protein LOC100499810 [Glycine max] |
| Swissprot | tr|Q9T029|RS254_ARATH | 3.00E-54 | 40S ribosomal protein S25-4 |
| trEMBL | tr|C6SWX1|C6SWX1_SOYBN | 2.00E-71 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G01270.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01607 | 13378 | 15492 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001607s00029745.1 | PF03297.10 | Ribosomal_S25 | 1 | 106 | 8.20E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 424.665 |
| SRR1783600 | control | 428.636 |
| SRR1783602 | moderate drought stress | 295.799 |
| SRR1811619 | moderate drought stress | 296.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 239.778 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 235.938 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 166.414 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 163.355 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 239.773 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 239.088 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 85.367 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 83.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 269.200 |
| SRR2868004 | Drought Stress (root) | 159.932 |
| SRR2967015 | Control (root) | 144.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 132.364 |
| SRR9715740 | Leaf | 146.985 |
| SRR9715741 | Leaf | 105.225 |
| SRR9715739 | Root | 252.551 |
| SRR9715742 | Root | 151.901 |
| SRR9715743 | Root | 173.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 336.559 |
| SRR8749028 | MeJA induced 9h | 75.497 |
| SRR8749029 | MeJA induced 9h | 212.241 |
| SRR8749030 | Uninduced | 26.686 |
| SRR8749031 | Uninduced | 19.635 |
| SRR8749032 | Uninduced | 46.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 219.884 |
| SRR8400027 | Control - Root | 184.666 |