Gene detail information of Glyur001607s00029743 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66440.1 | 1.00E-15 | |
| NR | BAF98220.1 | 2.56E-81 | CM0216.380.nc [Lotus japonicus] |
| trEMBL | tr|B0BLI4|B0BLI4_LOTJA | 1.00E-81 | CM0216.380.nc protein {ECO:0000313|EMBL:BAF98220.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01607 | 1213 | 2046 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001607s00029743.1 | PF14364.1 | DUF4408 | 68 | 88 | 3.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.613 |
| SRR1783600 | control | 8.412 |
| SRR1783602 | moderate drought stress | 11.729 |
| SRR1811619 | moderate drought stress | 11.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.460 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.348 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.817 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.514 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 49.422 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 48.202 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.666 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.086 |
| SRR2868004 | Drought Stress (root) | 20.993 |
| SRR2967015 | Control (root) | 20.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.228 |
| SRR9715740 | Leaf | 21.800 |
| SRR9715741 | Leaf | 14.459 |
| SRR9715739 | Root | 0.328 |
| SRR9715742 | Root | 14.448 |
| SRR9715743 | Root | 12.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.013 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.141 |
| SRR8400027 | Control - Root | 12.622 |