Gene detail information of Glyur001604s00033252 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G19110.1 | 1.00E-172 | inter-alpha-trypsin inhibitor heavy chain-related |
| NR | XP_004488095.1 | 0 | PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3-like isoform X1 [Cicer arietinum] |
| COG | YP_769024.1 | 4.00E-17 | transmembrane protein [Rhizobium leguminosarum bv. viciae 3841] |
| trEMBL | tr|G7IGH7|G7IGH7_MEDTR | 0 | Inter-alpha-trypsin inhibitor heavy chain-like protein {ECO:0000313|EMBL:AES65579.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01604 | 43693 | 54290 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001604s00033252.1 | PF13519.1 | VWA_2 | 261 | 389 | 3.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.644 |
| SRR1783600 | control | 0.762 |
| SRR1783602 | moderate drought stress | 0.544 |
| SRR1811619 | moderate drought stress | 0.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.027 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.920 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.353 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.197 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.327 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.409 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.079 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.321 |
| SRR2868004 | Drought Stress (root) | 2.306 |
| SRR2967015 | Control (root) | 1.773 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.994 |
| SRR9715740 | Leaf | 1.113 |
| SRR9715741 | Leaf | 0.640 |
| SRR9715739 | Root | 0.258 |
| SRR9715742 | Root | 1.476 |
| SRR9715743 | Root | 0.941 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.159 |
| SRR8749028 | MeJA induced 9h | 1.408 |
| SRR8749029 | MeJA induced 9h | 2.006 |
| SRR8749030 | Uninduced | 0.532 |
| SRR8749031 | Uninduced | 0.316 |
| SRR8749032 | Uninduced | 0.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.201 |
| SRR8400027 | Control - Root | 4.161 |