Gene detail

Gene detail information of Glyur001604s00033250.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G05830.1	2.00E-135	NagB/RpiA/CoA transferase-like superfamily protein
NR	KHN12290.1	0	Methylthioribose-1-phosphate isomerase [Glycine soja]
COG	YP_003702619.1	2.00E-93	translation initiation factor, aIF-2BI family [Syntrophothermus lipocalidus DSM 12680]
Swissprot	tr\|B9HCR2\|MTNA_POPTR	0	Methylthioribose-1-phosphate isomerase {ECO:0000255\|HAMAP-Rule:MF_03119}
trEMBL	tr\|G7IGG7\|G7IGG7_MEDTR	0	Methylthioribose-1-phosphate isomerase {ECO:0000256\|HAMAP-Rule:MF_03119}

Sequence

Transcript Sequence

>Glyur001604s00033250.1
TGTTAACGCTAAAAAAATTGCATATTGGCTGCCGTGAGTGCTGTCGAATCTTCATTCTGTGCGATAAAAAGAAAAGGGTAACACGAATACATGATTGCTGGTTCATTGCACGCAGTCGCACGCGACGCCACTCTCCGTGACTCTTGCGTTGCTGCGTCCAGTGGCAAACCGAGAATCAGTTAAAAACCCTCCTTTGGGAACTGAAACCCATGGCATCTGATTCGAACGACGTTGCTGCCACCAACACGCTCCAGTCCATCTGCTACAACCGCGGTTCTCTTCAGCTTCTTGATCAGAGAAAACTCCCTCTTGAAACCATTTACTTGGATATTCGGGATTCAACAGATGGCTGCCACTGCAACCTGAGATGTGGTGGCTGCCGCATCACATGGAATGCCATACGGGATATGGTGGTCAGGGGAGCTCCTGCTATTGCTATTGCTGCAGCACTCTCTCTGGCTGTGGAGGTGTTCAATTTAGATAATTTTAATGGGTCCCCCGGTGATGCTGCTTCATTCCTGCAGAAGAAGTTGGAATATCTTGTATCAAGTCGGCCAACTGCAGTGAACCTATCGGATGCCGCGACAAAACTTAAAGAAGTCGCATCTAAGGCTGCTGCTACCACTTCAGAGGCCAGGAGTGTTTTTCAGGCTTATATAGAGGCTGCTGAAATTATGCTTGAGGATGATGTTGCCTCGAACAAAGCAATTGGTTCTCATGGAGCTAGTTTTATTCAACAACAAACAGAGAAAAACAAACTTTCTGTTTTGACCCATTGCAACACTGGAAGTTTAGCCACAGCTGGATATGGCACTGCTCTGGGTGTAATCCGTGCACTTCACAGTGGAGGGGTTTTAGAAAGGGCTTATTGTACAGAAACACGCCCATTCAATCAAGGGTCTAGACTTACTGCCTTCGAGTTGGTACATGACAAAATACCAGCAACTCTTATAGCAGATTCTGCTGCAGCTGCATTAATGAAAGCGGGACGTGTGGATGCTGTTGTTGTTGGGGCAGATCGTGTTGCGTCAAACGGTGACACTGCCAACAAAATTGGAACCTATAGTGTTGCCTTATGTGCCGAGTTTCATAATGTACCTTTTTATGTGGCNGCACCCTTGACATCTATTGATCTATCACTTTCTTCTGGACAACAAATTGTGATTGAGGAGAGATCTCCCAAGGAACTGTTGAACTCACGTGGAGGACTTGGAGAACAGGTTGCTGCCTCAGGAATATTTGTGTGGAACCCGGCTTTNGATGTCACACCTGCTAATCTAATATCTGGGATCATCACTGAGAAGGGTGTCATTACGAAGACATCTGCTGGTGATGCTTTTGATATAAAAGCTTTCATACAGAAAACTGGTTAAGGGCTGAANGTATTCAGTGCCAATGTCCCATGGTGGTGAAGTGAGTTTTTTCTCACATGTTTAATCCATTGTGGATTTAAAAAGTATGTGTTAGGGGGTTGTATGACTAGAGGATCAGCTTGCTCAATGTAAGTGTCCCAGAAAACAAAACAGGGCCTGGTTAATAAACAAGTCAATAAGAAATACGCGGTGACCTTGCATGGTTAAAATGGAATGGTAGGAGTAGAGCTAGGTTTACAGGTCGAGGCTCGTGGGCCACTTCTTTAACCCGCTACCCACATGGGCCACAGGCCCTTAAATATGAGGCTCATTTAATTGTGGGCCCCTTAAGCCCCACATTTAGACCCTAGATTCNGTGGATTTTGTCCATAGTTTGTTGGTCAACTCGTTGGCTTTTTCTCAAAAACGGGTTTTTAATTGAGGCACACAAACACTAAAACATAGACATGGTTTGACCAAGAAAAAAACAAAAAACATAGACATGGTTTTAGAGAATCCCAAATCAGAATTAGAAGCACAACTGTTGAGCCCTCTCCCCTTTCCTTTCTTCTGCGCGGCCAGCCACCGCCGAACCTTCAACACCGTCCTTGTCCTCACTAGAGCTACGTATATGGGCTGACTCGCCCATTTAGGCCCTCCCTGCAAAGACCTGCGAATAAACGGATCGAGTCAACTCAAAATGCAAAATAAATGACTCCATCCTTGATGTACTTGGCTCCTCCTTTTTTCCAATCACCACATTTTGATCTTTATCCACAACTCATCACAAGTCATAATTTATAAGTAAGGTGGTTAAAATGCAAAATAAAATTCAATGCAACATTATCTATACTATTTACTTTTCACACCAAATCCTAGCAACCAATTTTTGGTACAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01604	27814	32046	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08963	mtnA	EC:5.3.1.23	Cysteine and methionine metabolism	map00270

Gene Ontology

biological_process

GO:0044237 cellular metabolic process

GO:0044249 cellular biosynthetic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001604s00033250.1	PF01008.12	IF-2B	69	369	6.70E-75

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	96.343
SRR1783600	control	97.081
SRR1783602	moderate drought stress	177.857
SRR1811619	moderate drought stress	176.634

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	120.608
DRR006520	Root Summer glycyrrhizin high producing strain	119.250
DRR006521	Root Winter glycyrrhizin high producing strain	55.854
DRR006522	Root Winter glycyrrhizin high producing strain	54.337
DRR006523	Root Summer glycyrrhizin low producing strain	93.460
DRR006524	Root Summer glycyrrhizin low producing strain	92.622
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.618
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.703

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.075
SRR2868004	Drought Stress (root)	44.950
SRR2967015	Control (root)	40.647

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.017
SRR9715740	Leaf	26.973
SRR9715741	Leaf	33.417
SRR9715739	Root	71.890
SRR9715742	Root	98.483
SRR9715743	Root	90.120

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	83.740
SRR8749028	MeJA induced 9h	69.056
SRR8749029	MeJA induced 9h	74.825
SRR8749030	Uninduced	86.666
SRR8749031	Uninduced	62.615
SRR8749032	Uninduced	86.940

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	51.748
SRR8400027	Control - Root	52.254