Gene detail

Gene detail information of Glyur001601s00027176.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37430.1	3.00E-30	C2H2 and C2HC zinc fingers superfamily protein
NR	XP_010068234.1	1.67E-84	PREDICTED: zinc finger protein 433-like [Eucalyptus grandis]
Swissprot	tr\|Q9SLD4\|ZAT11_ARATH	7.00E-37	Zinc finger protein ZAT11
trEMBL	tr\|G7L0M7\|G7L0M7_MEDTR	4.00E-74	Uncharacterized protein {ECO:0000313\|EMBL:AFK47111.1}

Sequence

Transcript Sequence

>Glyur001601s00027176.1
ATGAAGAGACAGAGAGATAGCAATGAAAGAACAGAGAGCTTAGATTTGGCAAATTGTATGATGCTGCTATCTTCTTGTCCACAACAGAAAAGAAGCTATGAGGGTGTGGAATTTGAGTGCAAGACCTGCAACCGAAAATTCTCATCCTTTCAAGCACTCGGTGGCCACAGGGCTAGCCACAAGAGGCAGAAACTAGAAGGGGAAGAACTCAAAGAACAGGGTAAAGCTTTGAGCTTGTGGAATAAACCCAAAATGCACGAGTGCTCAATTTGTGGAATGGGATTCTCTCTGGGNCAGGCATTGGGAGGCCACATGAGAAAGCACAGAACTGCTGCNATCAACGAAGGGTTTTCTTCTATCAACCAATTAGTTATTGCAAAAATCCCGGTTCTGAAAAGATCGAATAGTAAGAGGGTTATGTGCTTGGATTTGGACTTGAACTTGACACCGTTCGANAATGACTTGGTGATTGGAATGAAGTCACCCCCAATAGCAATGAAGAGACAGAGAGATATTGAAGGATTAGGGAGCATAGATTTGGCAAATTGTCTAATGCTGCTCTCTTGTCCTCCCCAACAACAACAAAGCAAACGGAAANCAAGTTTTGGGCAAGTAGAATTTGAGTGCAAGACATGTAACCGCAAGTTCTCGTCGTTTCAAGCACTAGGTGGCCATAGAGCTAGCCACAAGAGATCGAAGATTCTAGAAGGGGATGTTGATGAACTGAAAGCTACGTCTCTGAGGTTGGGAATCATTAATAAACCCAAAGTGCACGAGTGCTCCATTTGTGGACAAGAGTTTTCTCTGGGTCAGGCATTGGGTGGCCACATGAGAAGGCACAGAGCTTTACTCATTAACGAAGAGTTTTCTTCTTCTTCTTCCATAGAAAAGGTTATGTGCTTGGACTTGAACCTGACACCGTTGGAGAATGACTTGAAGTTGTTGTTTGGATCAAAGATGGCACCCACCACAATGTTGATGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01601	27267	30776	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2
EAR motif-containing Proteins	C2H2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001601s00027176.1	PF13912.1	zf-C2H2_6	38	61	4.20E-08
Glyur001601s00027176.1	PF13912.1	zf-C2H2_6	86	109	1.30E-06
Glyur001601s00027176.1	PF13912.1	zf-C2H2_6	207	231	2.40E-08
Glyur001601s00027176.1	PF13912.1	zf-C2H2_6	257	282	2.10E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.085
SRR1783600	control	0.076
SRR1783602	moderate drought stress	0.245
SRR1811619	moderate drought stress	0.298

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	95.152
DRR006520	Root Summer glycyrrhizin high producing strain	94.966
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	64.030
DRR006524	Root Summer glycyrrhizin low producing strain	63.648
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.862
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.856

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.638
SRR2868004	Drought Stress (root)	37.577
SRR2967015	Control (root)	192.258

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	255.523
SRR9715740	Leaf	330.042
SRR9715741	Leaf	267.950
SRR9715739	Root	174.603
SRR9715742	Root	269.483
SRR9715743	Root	236.545

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	181.916
SRR8749028	MeJA induced 9h	74.741
SRR8749029	MeJA induced 9h	84.767
SRR8749030	Uninduced	144.392
SRR8749031	Uninduced	88.143
SRR8749032	Uninduced	169.985

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.417
SRR8400027	Control - Root	65.383