Gene detail

Gene detail information of Glyur001601s00027175.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53580.1	1.00E-132	diaminopimelate epimerase family protein
NR	XP_004492530.1	0	PREDICTED: diaminopimelate epimerase, chloroplastic-like [Cicer arietinum]
COG	NP_486088.2	2.00E-124	diaminopimelate epimerase [Nostoc sp. PCC 7120]
Swissprot	tr\|Q9LFG2\|DAPF_ARATH	0	Diaminopimelate epimerase, chloroplastic (Precursor)
trEMBL	tr\|I1NA10\|I1NA10_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G35780.1}

Sequence

Transcript Sequence

>Glyur001601s00027175.1
AGCAAGTAACAGTACCCAACCCGATCAAACCCTCTCGCTACAGCATCGAGGCAGTGTTGCCTTTCTTCCTTCTATCCTTCAAACTACAGCAACCNCACTGCCACCACCGCCGGCCGCCGCTAAAAGTAGGCCCAAACCCGCCGTGCCCCACCTTTCTCCTCCGCTTGNCGCGCGTCTGCCTCGTCGACGTCGTCACTGCCACGGTGGTCGTCCCCCCTCCCCCCGCGAGTATCTCAGTCGCACCGTCGCGGCCATTACCCGACCGCNCCGTGCGTCTCCCCGTGTCCTTCGTCGCGGACTTTGCGGTGGAACGAAGTCAAAAGGAGAAGAGGGAAAGGGAGAATCGAGTAGCCGCCAGCATTTGAAAGTGCAGCGATGGCCATAGCCGCCACCATTTCAGTTCCCCTTACATCGCCCACTCGCCGCTCTCTTGCNTCCTCCGTCAATTTCCTTCGCCCTTCTTCTCGTTCCATTATTGCCACACCCCAACGCGCTTTCAAATACCCTAATTCCCGCCTCCTTGCTACTTCCTCCATGAGCACAGAAGCACCCGTTAAAACGACNTCTTCCACTTCCTTCCTCCACCGCATCGACTCCGAGAGTGGGTTTCTCCATTTCGCCAAGTATCANGGCCTCGGAAACGACTTCGTTTTGATCGATAATAGAGACTCTTCCGAGCCAAGGATCAGTCCGGAGAAAGCTGTGCAGCTCTGTGACCGCAACTTTGGCGTTGGTGCCGATGGAGTTATCTTTGTCTTGCCTGGCATCAACGGCACTGACTATACCATGAGGATTTTCAACTCTGATGGTAGTGAGCCTGAGATGTGTGGCAATGGAGTGCGATGCTTTGCCAAATTCGTTTCTCAGCTAGAGAATTTACGTGGTNGGCACAGTTTCACCATACATACTGGTGCTGGGCTGATTGTGCCTGAAGTCTTGGAGGATGGAAATGTCAGAGTTGATATGGGGGAACCTATCCTTAAAGCATCAGATGTGCCTACTAAATTGCCTGCAAATAAGGATCTTGCTGTTGTTAANTCCGAGATAGATGTTGATGGAGTTATCTGGAATGTCACTTGTGTGAGCATGGGAAATCCACACTGTGTAACCTTCAGCAGAACAGGAATTCAGAATTTGCTTGTTGATGAATTGAAGCTAGCAGAANTTGGCCCAAAATTTGAACATCATGAGATGTTCCCTGCACGAACTAACACAGAGTTTGTGCAAGTTCTTTCTAGTTCTCACCTGAAGATGCGTGTTTGGGAGCGTGGAGCAGGAGCAACTCTTGCCTGTGGAACTGGAGCTTGTGCTACTGTTGTTGCNGCAGTTCTTGAAGGTCGTGCTGGGAGGAATTGCACGGTTGATCTACCTGGAGGGCCTCTTCAGATTGAATGGAGGGAGGAAGATAATCATGTCTATATGACAGGTTCAGCGGAACTAGTGTATTACGGATCTTTGCCCCTTTAAAATATTTCCCCAAAATTGTGTTAAACCCAATACTCCGGGGAGTTATAAATNGCTTNATAATAATTGTATAAGAGAGGCTGACTTTCACTTTGTACTGAATGTTTTCACCACGTATTCAATATCTTCCATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01601	21028	25212	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01778	dapF	EC:5.1.1.7	Biosynthesis of amino acids	map01230
			Biosynthesis of amino acids	map01230
			Lysine biosynthesis	map00300
			Lysine biosynthesis	map00300

Gene Ontology

biological_process
GO:0009089 lysine biosynthetic process via diaminopimelate

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0008837 diaminopimelate epimerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001601s00027175.1	PF01678.14	DAP_epimerase	81	201	2.10E-33
Glyur001601s00027175.1	PF01678.14	DAP_epimerase	235	356	2.90E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	220.533
SRR1783600	control	216.369
SRR1783602	moderate drought stress	139.753
SRR1811619	moderate drought stress	135.534

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	99.320
DRR006520	Root Summer glycyrrhizin high producing strain	95.351
DRR006521	Root Winter glycyrrhizin high producing strain	40.409
DRR006522	Root Winter glycyrrhizin high producing strain	40.839
DRR006523	Root Summer glycyrrhizin low producing strain	69.714
DRR006524	Root Summer glycyrrhizin low producing strain	71.027
DRR006525	Leaf Summer glycyrrhizin high producing strain	49.672
DRR006526	Leaf Summer glycyrrhizin high producing strain	44.993

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	274.085
SRR2868004	Drought Stress (root)	162.925
SRR2967015	Control (root)	183.476

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	57.511
SRR9715740	Leaf	38.732
SRR9715741	Leaf	44.126
SRR9715739	Root	203.718
SRR9715742	Root	152.214
SRR9715743	Root	172.336

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	79.093
SRR8749028	MeJA induced 9h	43.523
SRR8749029	MeJA induced 9h	65.134
SRR8749030	Uninduced	62.273
SRR8749031	Uninduced	53.533
SRR8749032	Uninduced	80.243

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	176.012
SRR8400027	Control - Root	149.702