Gene detail

Gene detail information of Glyur001601s00027171.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53570.4	0	FUS3-complementing gene 1
NR	XP_003521349.1	0	PREDICTED: serine/threonine-protein kinase AFC1-like isoform 1 [Glycine max]
COG	YP_004959349.1	2.00E-18	serine/threonine protein kinase [Streptomyces bingchenggensis BCW-1]
Swissprot	tr\|P51566\|AFC1_ARATH	0	Serine/threonine-protein kinase AFC1
trEMBL	tr\|I1JPE8\|I1JPE8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G33100.1}

Sequence

Transcript Sequence

>Glyur001601s00027171.1
GCTCCTTCTCTCTCTCTCTCTCTCTATCTCCCTCCTCCTGGCTCCTCCACCACCCCTCGGCTTCAGCCTCAGATCTCATTCGATCCAACATTAGGGTTTCAAATTTGGGAAAAATCTTCCCAATCCGGTGTTGCTGATCCGAGTTTAATCTCCGATGCATTAAATTAAATTGAAAAAAATCCCCATGCATCGTGACGAGAGCTATATACAGAGATAAATGGAAACGCAGTGGATTATCGAGCTTCCNCATAGGAACATGGACAAGAGGCCAAGGAAGAGACCTCGTTTGACATGGGATAATCCACCACCTCCTCCTCCACCTCCTCTTCCTCCTTTGAAGGTTCTTCCTACAATATATTGCAGCCAGGAGGTTGGGAATGGAGTGGTTCCAAATCAGGCTTATCCATCCATGTTTTATAGGGGAATGCCTCGTAATGGATCACCCCCTTGGAGGCCTGATGATAAAGATGGTCACTATGTTTTTGTCGTTGGTGAATATTTAACACCTCGATACAGAATTCTCGGCAAAATGGGTGAAGGAACTTTTGGCCAAGTCTTGGAATGTTTTGACAATGAAAAGAAAGAAGCTGTGGCAATAAAAATTGTTCGCTCCATAAATAAGTATCGTGAGGCTGCAATGACTGAGATTGATATCTTGCTGAGGCTAGCCAGACATGATGTTGATGGTGCACGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGACCAAGCTTATATGATTTTCTCCGCAAAAACAGCTATCGTTCTTTCCCCATTGATCTTGTTCGAGAGTTTGGCAGACAACTTTTGGAGTCTGTAGCATTTATGCATGATTTATGCTTGATTCACACTGATTTGAAGCCAGAGAATATTCTTCTTGTCTCATCAGAAATTATTAAAGTGCCAGACTACAAGTTTCTATCAAGGACCATGAAAGATGGATCCTATTTCAAGAATCTGCCTAAGTCAAGTGCCATTAAGCTCATTGATTTTGGGAGTACAGCATTTGAACATCAGGATCACAGTTACGTGGTGTCAACAAGACACTATCGTGCNCCAGAAGTTATCTTAGGTCTTGGGTGGAACTATCCTTGCGATCTTTGGAGTGTGGGCTGCATACTGGTTGAGCTTTTCTCTGGTGAGGCACTTTTCCAAACACATGAAAACTTGGAACATCTTGCCATGATGGAGAGAGTGTTAGGGCCACTACCTTCCCATATGGTGGTCAGGGCTGATCGTCGAGCTGAGAAGTATTTTAAACGAGGTGCACGATTAGGTTGGCCTGATAGTTCAACTTCAAAAGAAAGCATGAGGGCAGTTTGGAAATTGCCACGTTTACCGAACCTTGTAATGCAGCATGTTGATCATTCTGCCGGTGATTTGATTGACCTATTGCAAGGGCTCCTAAGGTATGACCCNGCAGAACGGCTTAAAGCAAGGGAAGCATTAAGACATCCCTTCTTCTTCACAAGAGATCCTAGAAGATATGGTTACCCTTTATAAGCATTACCTTTTATTTTATAAGAGAAAATATGGTTGAGAATCAATGTTATATAAATACAAGTACTTGAATTCGGTTGATTGATTGCTCCAATGTATAGTGAATTGCACTTCGTTTTTTACTTTGCATTGTTTGTTCTTTTCCTTTTTTTTTCTTCCCCCCTCCCGGCACCCCCCTCTCACCTGTTGGTGTTTGAGCGAGTAATTGATTGCTACTGCGTGCTGCTGGTTGAAAAATAAGCTTTTAATTGGAAGCACTGTTTAACCTGTCGTCAAGAGGAAGTGATTGGAGTGGAGTCAAATGCAGTCTTCCTTTTCATCCAAAAAAAAATGCAGTCTTCCATACATGATTGGTAGCAGTGAGGGGATGGGTTGGTGGGTTTGGGTGAGGGATATTTGTATGNTCTGGAGAAGGCCACAGAGGAGAAGGGACATCGGCCGCAGGTGATTTGTCATCAAAAGCATTGATTTTAATTCCCAAAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01601	11250	16059	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001601s00027171.1	PF00069.20	Pkinase	99	427	1.10E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.734
SRR1783600	control	14.915
SRR1783602	moderate drought stress	19.261
SRR1811619	moderate drought stress	19.157

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.470
DRR006520	Root Summer glycyrrhizin high producing strain	18.185
DRR006521	Root Winter glycyrrhizin high producing strain	13.747
DRR006522	Root Winter glycyrrhizin high producing strain	12.813
DRR006523	Root Summer glycyrrhizin low producing strain	24.110
DRR006524	Root Summer glycyrrhizin low producing strain	24.457
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.492
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.327

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.831
SRR2868004	Drought Stress (root)	41.033
SRR2967015	Control (root)	39.902

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.165
SRR9715740	Leaf	29.508
SRR9715741	Leaf	24.426
SRR9715739	Root	8.484
SRR9715742	Root	13.221
SRR9715743	Root	11.439

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.297
SRR8749028	MeJA induced 9h	22.094
SRR8749029	MeJA induced 9h	13.742
SRR8749030	Uninduced	19.206
SRR8749031	Uninduced	14.262
SRR8749032	Uninduced	12.044

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.163
SRR8400027	Control - Root	30.203