Gene detail information of Glyur001600s00030356 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46330.1 | 3.00E-10 | arabinogalactan protein 16 |
| NR | KHN40352.1 | 4.75E-24 | Arabinogalactan peptide 20 [Glycine soja] |
| Swissprot | tr|O82337|AGP16_ARATH | 3.00E-13 | Arabinogalactan peptide 16 (Precursor) |
| trEMBL | tr|K7L1E2|K7L1E2_SOYBN | 5.00E-24 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G15281.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01600 | 56446 | 56960 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001600s00030356.1 | PF06376.7 | DUF1070 | 36 | 68 | 1.60E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.387 |
| SRR1783600 | control | 8.308 |
| SRR1783602 | moderate drought stress | 5.343 |
| SRR1811619 | moderate drought stress | 5.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.378 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.320 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.103 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.097 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.340 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.585 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.982 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 77.007 |
| SRR2868004 | Drought Stress (root) | 31.756 |
| SRR2967015 | Control (root) | 30.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.806 |
| SRR9715740 | Leaf | 6.440 |
| SRR9715741 | Leaf | 9.818 |
| SRR9715739 | Root | 6.980 |
| SRR9715742 | Root | 5.640 |
| SRR9715743 | Root | 6.316 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.624 |
| SRR8749028 | MeJA induced 9h | 7.134 |
| SRR8749029 | MeJA induced 9h | 19.841 |
| SRR8749030 | Uninduced | 18.023 |
| SRR8749031 | Uninduced | 4.788 |
| SRR8749032 | Uninduced | 6.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 35.524 |
| SRR8400027 | Control - Root | 48.740 |