Gene detail information of Glyur001600s00030354 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G56710.1 | 1.00E-42 | Ribosomal protein L31e family protein |
| NR | XP_007152936.1 | 2.45E-78 | hypothetical protein PHAVU_004G172800g [Phaseolus vulgaris] |
| COG | YP_006774251.1 | 3.00E-09 | 50S ribosomal protein L31e [Candidatus Nitrosopumilus koreensis AR1] |
| Swissprot | tr|Q9M573|RL31_PERFR | 1.00E-69 | 60S ribosomal protein L31 |
| trEMBL | tr|V7C7N0|V7C7N0_PHAVU | 9.00E-79 | Uncharacterized protein {ECO:0000313|EMBL:ESW24931.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01600 | 49899 | 51434 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001600s00030354.1 | PF01198.14 | Ribosomal_L31e | 10 | 93 | 6.60E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 77.845 |
| SRR1783600 | control | 78.433 |
| SRR1783602 | moderate drought stress | 79.618 |
| SRR1811619 | moderate drought stress | 78.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 226.881 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 225.632 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 143.600 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 142.855 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 217.705 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 217.057 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 84.841 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 85.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 331.443 |
| SRR2868004 | Drought Stress (root) | 181.347 |
| SRR2967015 | Control (root) | 156.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 123.114 |
| SRR9715740 | Leaf | 108.120 |
| SRR9715741 | Leaf | 95.455 |
| SRR9715739 | Root | 91.262 |
| SRR9715742 | Root | 114.119 |
| SRR9715743 | Root | 104.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 490.625 |
| SRR8749028 | MeJA induced 9h | 166.014 |
| SRR8749029 | MeJA induced 9h | 300.399 |
| SRR8749030 | Uninduced | 58.215 |
| SRR8749031 | Uninduced | 33.601 |
| SRR8749032 | Uninduced | 53.655 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 278.254 |
| SRR8400027 | Control - Root | 236.725 |