Gene detail information of Glyur001600s00030350 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G19710.1 | 3.00E-79 | Regulator of Vps4 activity in the MVB pathway protein |
| NR | KHN32904.1 | 0 | IST1-like protein [Glycine soja] |
| trEMBL | tr|K7K129|K7K129_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G00720.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01600 | 34872 | 39908 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001600s00030350.1 | PF03398.9 | Ist1 | 12 | 173 | 1.20E-54 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.008 |
| SRR1783600 | control | 4.115 |
| SRR1783602 | moderate drought stress | 4.023 |
| SRR1811619 | moderate drought stress | 4.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.050 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.891 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.180 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.687 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.810 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.789 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.700 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.689 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.118 |
| SRR2868004 | Drought Stress (root) | 25.068 |
| SRR2967015 | Control (root) | 20.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.080 |
| SRR9715740 | Leaf | 17.588 |
| SRR9715741 | Leaf | 25.556 |
| SRR9715739 | Root | 1.440 |
| SRR9715742 | Root | 16.950 |
| SRR9715743 | Root | 15.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.205 |
| SRR8749028 | MeJA induced 9h | 51.685 |
| SRR8749029 | MeJA induced 9h | 44.407 |
| SRR8749030 | Uninduced | 43.518 |
| SRR8749031 | Uninduced | 68.162 |
| SRR8749032 | Uninduced | 59.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.510 |
| SRR8400027 | Control - Root | 13.715 |