Gene detail information of Glyur001600s00030349 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29470.1 | 3.00E-35 | Phospholipase A2 family protein |
| NR | XP_004513090.1 | 3.70E-71 | PREDICTED: probable phospholipase A2 homolog 1-like [Cicer arietinum] |
| Swissprot | tr|Q9XG80|PLA21_ORYSJ | 2.00E-43 | Probable phospholipase A2 homolog 1 (Precursor) |
| trEMBL | tr|G7KJ78|G7KJ78_MEDTR | 4.00E-68 | Phospholipase A2 family protein {ECO:0000313|EMBL:AES77096.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01600 | 31565 | 33310 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001600s00030349.1 | PF00068.14 | Phospholip_A2_1 | 55 | 103 | 0.00024 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.785 |
| SRR1783600 | control | 9.597 |
| SRR1783602 | moderate drought stress | 21.101 |
| SRR1811619 | moderate drought stress | 21.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.807 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.122 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.549 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.075 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.888 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.081 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.003 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.292 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.451 |
| SRR2868004 | Drought Stress (root) | 15.027 |
| SRR2967015 | Control (root) | 18.670 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 27.061 |
| SRR9715740 | Leaf | 26.148 |
| SRR9715741 | Leaf | 20.911 |
| SRR9715739 | Root | 11.785 |
| SRR9715742 | Root | 11.362 |
| SRR9715743 | Root | 12.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.052 |
| SRR8749028 | MeJA induced 9h | 23.657 |
| SRR8749029 | MeJA induced 9h | 31.698 |
| SRR8749030 | Uninduced | 60.940 |
| SRR8749031 | Uninduced | 84.517 |
| SRR8749032 | Uninduced | 83.906 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.256 |
| SRR8400027 | Control - Root | 16.075 |